Hb_003159_090

Information

Type -
Description -
Location Contig3159: 157201-157493
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 015_P01r.ab1: 157199-157798

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003159_090 0.0 - - -
2 Hb_003209_060 0.155253762 - - -
3 Hb_000261_450 0.2179919955 - - Pectinesterase U1 precursor, putative [Ricinus communis]
4 Hb_000380_020 0.2281161298 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
5 Hb_000003_270 0.2466254823 - - PREDICTED: cytokinin dehydrogenase 6 [Jatropha curcas]
6 Hb_000731_250 0.2479575032 - - -
7 Hb_007576_030 0.2581332614 - - -
8 Hb_001214_120 0.2641029313 - - -
9 Hb_009974_030 0.2669750756 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
10 Hb_000165_010 0.2707260429 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
11 Hb_000749_250 0.2742680796 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]
12 Hb_001511_140 0.2751411824 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
13 Hb_113906_010 0.275682379 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
14 Hb_001369_450 0.2778721521 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_003086_060 0.2806428443 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
16 Hb_009838_010 0.2808072918 - - -
17 Hb_000638_020 0.2810499638 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]
18 Hb_004942_010 0.2814069328 - - hypothetical protein AMTR_s00057p00201180 [Amborella trichopoda]
19 Hb_000771_130 0.2814311486 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
20 Hb_005839_110 0.2820069709 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]

Gene co-expression network

sample Hb_003159_090 Hb_003159_090 Hb_003209_060 Hb_003209_060 Hb_003159_090--Hb_003209_060 Hb_000261_450 Hb_000261_450 Hb_003159_090--Hb_000261_450 Hb_000380_020 Hb_000380_020 Hb_003159_090--Hb_000380_020 Hb_000003_270 Hb_000003_270 Hb_003159_090--Hb_000003_270 Hb_000731_250 Hb_000731_250 Hb_003159_090--Hb_000731_250 Hb_007576_030 Hb_007576_030 Hb_003159_090--Hb_007576_030 Hb_014497_110 Hb_014497_110 Hb_003209_060--Hb_014497_110 Hb_003209_060--Hb_000380_020 Hb_009974_030 Hb_009974_030 Hb_003209_060--Hb_009974_030 Hb_012366_020 Hb_012366_020 Hb_003209_060--Hb_012366_020 Hb_003906_100 Hb_003906_100 Hb_003209_060--Hb_003906_100 Hb_001511_140 Hb_001511_140 Hb_000261_450--Hb_001511_140 Hb_003095_070 Hb_003095_070 Hb_000261_450--Hb_003095_070 Hb_000788_080 Hb_000788_080 Hb_000261_450--Hb_000788_080 Hb_002450_070 Hb_002450_070 Hb_000261_450--Hb_002450_070 Hb_001258_140 Hb_001258_140 Hb_000261_450--Hb_001258_140 Hb_000281_230 Hb_000281_230 Hb_000261_450--Hb_000281_230 Hb_006594_020 Hb_006594_020 Hb_000380_020--Hb_006594_020 Hb_001279_130 Hb_001279_130 Hb_000380_020--Hb_001279_130 Hb_000749_250 Hb_000749_250 Hb_000380_020--Hb_000749_250 Hb_005614_050 Hb_005614_050 Hb_000380_020--Hb_005614_050 Hb_001143_090 Hb_001143_090 Hb_000380_020--Hb_001143_090 Hb_000638_020 Hb_000638_020 Hb_000380_020--Hb_000638_020 Hb_003209_200 Hb_003209_200 Hb_000003_270--Hb_003209_200 Hb_002138_010 Hb_002138_010 Hb_000003_270--Hb_002138_010 Hb_001338_040 Hb_001338_040 Hb_000003_270--Hb_001338_040 Hb_012291_030 Hb_012291_030 Hb_000003_270--Hb_012291_030 Hb_006065_010 Hb_006065_010 Hb_000003_270--Hb_006065_010 Hb_000196_080 Hb_000196_080 Hb_000003_270--Hb_000196_080 Hb_000731_250--Hb_007576_030 Hb_000906_130 Hb_000906_130 Hb_000731_250--Hb_000906_130 Hb_000316_020 Hb_000316_020 Hb_000731_250--Hb_000316_020 Hb_007017_020 Hb_007017_020 Hb_000731_250--Hb_007017_020 Hb_005224_030 Hb_005224_030 Hb_000731_250--Hb_005224_030 Hb_003124_060 Hb_003124_060 Hb_000731_250--Hb_003124_060 Hb_004942_010 Hb_004942_010 Hb_007576_030--Hb_004942_010 Hb_000988_040 Hb_000988_040 Hb_007576_030--Hb_000988_040 Hb_004195_100 Hb_004195_100 Hb_007576_030--Hb_004195_100 Hb_005211_070 Hb_005211_070 Hb_007576_030--Hb_005211_070 Hb_007576_030--Hb_003124_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.77453 7.98537 0 0 9.27909 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.8036 23.636 21.4182 4.01276 1.36911

CAGE analysis