Hb_001141_480

Information

Type -
Description -
Location Contig1141: 347018-347781
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04295: 345550-346052
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001141_480 0.0 - - -
2 Hb_000922_090 0.2404027796 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
3 Hb_003688_080 0.2659024749 - - -
4 Hb_163268_010 0.2943859739 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
5 Hb_001741_130 0.2943939124 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis sativus]
6 Hb_000756_020 0.2947743916 - - BnaA05g19440D [Brassica napus]
7 Hb_008505_020 0.2958744582 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_033835_020 0.2959885478 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005531_010 0.2968751175 - - hypothetical protein CICLE_v10033008mg [Citrus clementina]
10 Hb_002240_040 0.3015115261 - - -
11 Hb_167711_040 0.3147566347 - - PREDICTED: cucumisin-like [Jatropha curcas]
12 Hb_165666_010 0.3159695652 - - -
13 Hb_039229_010 0.3290680035 - - -
14 Hb_003786_090 0.3507299067 - - hypothetical protein JCGZ_19199 [Jatropha curcas]
15 Hb_000249_120 0.3513995228 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
16 Hb_000368_080 0.3597058436 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
17 Hb_002725_060 0.3624963969 - - PREDICTED: uncharacterized protein LOC105644961 [Jatropha curcas]
18 Hb_008790_050 0.3633295204 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004994_110 0.3642097035 - - -
20 Hb_004195_250 0.3674230453 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]

Gene co-expression network

sample Hb_001141_480 Hb_001141_480 Hb_000922_090 Hb_000922_090 Hb_001141_480--Hb_000922_090 Hb_003688_080 Hb_003688_080 Hb_001141_480--Hb_003688_080 Hb_163268_010 Hb_163268_010 Hb_001141_480--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_001141_480--Hb_001741_130 Hb_000756_020 Hb_000756_020 Hb_001141_480--Hb_000756_020 Hb_008505_020 Hb_008505_020 Hb_001141_480--Hb_008505_020 Hb_000922_090--Hb_003688_080 Hb_094890_010 Hb_094890_010 Hb_000922_090--Hb_094890_010 Hb_165666_010 Hb_165666_010 Hb_000922_090--Hb_165666_010 Hb_000589_160 Hb_000589_160 Hb_000922_090--Hb_000589_160 Hb_000832_230 Hb_000832_230 Hb_000922_090--Hb_000832_230 Hb_003688_080--Hb_165666_010 Hb_000352_180 Hb_000352_180 Hb_003688_080--Hb_000352_180 Hb_000368_080 Hb_000368_080 Hb_003688_080--Hb_000368_080 Hb_003688_080--Hb_000832_230 Hb_000249_120 Hb_000249_120 Hb_003688_080--Hb_000249_120 Hb_163268_010--Hb_001741_130 Hb_163268_010--Hb_008505_020 Hb_033835_020 Hb_033835_020 Hb_163268_010--Hb_033835_020 Hb_005531_010 Hb_005531_010 Hb_163268_010--Hb_005531_010 Hb_163268_010--Hb_000756_020 Hb_002240_040 Hb_002240_040 Hb_163268_010--Hb_002240_040 Hb_001741_130--Hb_008505_020 Hb_001741_130--Hb_033835_020 Hb_001741_130--Hb_005531_010 Hb_001741_130--Hb_000756_020 Hb_001741_130--Hb_002240_040 Hb_000756_020--Hb_008505_020 Hb_000756_020--Hb_033835_020 Hb_000756_020--Hb_005531_010 Hb_000756_020--Hb_002240_040 Hb_008505_020--Hb_033835_020 Hb_008505_020--Hb_005531_010 Hb_008505_020--Hb_002240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0753981 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.148661 0.239897 0 0

CAGE analysis