Hb_003688_080

Information

Type -
Description -
Location Contig3688: 53831-54473
Sequence    

Annotation

kegg
ID mdm:103436264
description putative ribonuclease H protein At1g65750
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003688_080 0.0 - - -
2 Hb_001141_480 0.2659024749 - - -
3 Hb_165666_010 0.2701581635 - - -
4 Hb_000352_180 0.2741354715 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000368_080 0.2838525918 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
6 Hb_000832_230 0.2963768676 transcription factor TF Family: C2H2 hypothetical protein JCGZ_18434 [Jatropha curcas]
7 Hb_000249_120 0.2991600998 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
8 Hb_070926_010 0.3010455807 - - PREDICTED: mRNA-decapping enzyme subunit 2-like [Populus euphratica]
9 Hb_000922_090 0.3045582688 - - PREDICTED: pentatricopeptide repeat-containing protein At1g11290-like [Populus euphratica]
10 Hb_001304_100 0.3099025793 - - -
11 Hb_113906_010 0.3166239225 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
12 Hb_000375_340 0.3175422875 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
13 Hb_148850_010 0.3225492959 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
14 Hb_010589_050 0.3247040929 - - -
15 Hb_004942_020 0.3247533082 - - Potassium transporter, putative [Ricinus communis]
16 Hb_002588_040 0.328195881 - - Pathogenesis-related protein 1 [Theobroma cacao]
17 Hb_058143_010 0.32949809 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
18 Hb_002382_030 0.3363616254 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2-like isoform X2 [Malus domestica]
19 Hb_012586_020 0.3365623928 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
20 Hb_000638_020 0.3377700186 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_003688_080 Hb_003688_080 Hb_001141_480 Hb_001141_480 Hb_003688_080--Hb_001141_480 Hb_165666_010 Hb_165666_010 Hb_003688_080--Hb_165666_010 Hb_000352_180 Hb_000352_180 Hb_003688_080--Hb_000352_180 Hb_000368_080 Hb_000368_080 Hb_003688_080--Hb_000368_080 Hb_000832_230 Hb_000832_230 Hb_003688_080--Hb_000832_230 Hb_000249_120 Hb_000249_120 Hb_003688_080--Hb_000249_120 Hb_000922_090 Hb_000922_090 Hb_001141_480--Hb_000922_090 Hb_163268_010 Hb_163268_010 Hb_001141_480--Hb_163268_010 Hb_001741_130 Hb_001741_130 Hb_001141_480--Hb_001741_130 Hb_000756_020 Hb_000756_020 Hb_001141_480--Hb_000756_020 Hb_008505_020 Hb_008505_020 Hb_001141_480--Hb_008505_020 Hb_004195_250 Hb_004195_250 Hb_165666_010--Hb_004195_250 Hb_165666_010--Hb_000368_080 Hb_000866_150 Hb_000866_150 Hb_165666_010--Hb_000866_150 Hb_001304_100 Hb_001304_100 Hb_165666_010--Hb_001304_100 Hb_165666_010--Hb_001141_480 Hb_010589_050 Hb_010589_050 Hb_000352_180--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_000352_180--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_000352_180--Hb_004942_020 Hb_012586_020 Hb_012586_020 Hb_000352_180--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_000352_180--Hb_039946_010 Hb_113906_010 Hb_113906_010 Hb_000352_180--Hb_113906_010 Hb_000368_080--Hb_004195_250 Hb_006586_010 Hb_006586_010 Hb_000368_080--Hb_006586_010 Hb_148850_010 Hb_148850_010 Hb_000368_080--Hb_148850_010 Hb_001966_010 Hb_001966_010 Hb_000368_080--Hb_001966_010 Hb_096225_020 Hb_096225_020 Hb_000832_230--Hb_096225_020 Hb_000638_020 Hb_000638_020 Hb_000832_230--Hb_000638_020 Hb_000380_020 Hb_000380_020 Hb_000832_230--Hb_000380_020 Hb_002983_030 Hb_002983_030 Hb_000832_230--Hb_002983_030 Hb_000193_240 Hb_000193_240 Hb_000832_230--Hb_000193_240 Hb_004453_140 Hb_004453_140 Hb_000832_230--Hb_004453_140 Hb_167711_040 Hb_167711_040 Hb_000249_120--Hb_167711_040 Hb_000249_120--Hb_000756_020 Hb_005072_010 Hb_005072_010 Hb_000249_120--Hb_005072_010 Hb_000068_030 Hb_000068_030 Hb_000249_120--Hb_000068_030 Hb_003786_090 Hb_003786_090 Hb_000249_120--Hb_003786_090 Hb_000249_120--Hb_163268_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0512898 0 0 0 0.15157 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.470086 0.32296 0.0388478 0

CAGE analysis