Hb_004195_250

Information

Type -
Description -
Location Contig4195: 198831-200251
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015658mg
description hypothetical protein
nr
ID XP_007206253.1
description hypothetical protein PRUPE_ppa015658mg [Prunus persica]
swissprot
ID -
description -
trembl
ID M5W136
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015658mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41440: 198991-199104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004195_250 0.0 - - hypothetical protein PRUPE_ppa015658mg [Prunus persica]
2 Hb_165666_010 0.225471494 - - -
3 Hb_000368_080 0.2421598101 - - hypothetical protein B456_002G103400 [Gossypium raimondii]
4 Hb_148122_010 0.2798419882 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
5 Hb_006586_010 0.3081336648 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000483_420 0.3264452932 - - PREDICTED: putative glycerol-3-phosphate transporter 4 [Jatropha curcas]
7 Hb_004460_010 0.3269856814 - - PREDICTED: SKI/DACH domain-containing protein 1-like [Jatropha curcas]
8 Hb_003069_020 0.3424777154 - - conserved hypothetical protein [Ricinus communis]
9 Hb_008014_070 0.3437639087 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_000733_130 0.3438346166 - - PREDICTED: cucumisin [Vitis vinifera]
11 Hb_000866_150 0.3492394316 - - -
12 Hb_161072_010 0.3524032959 - - -
13 Hb_153365_010 0.3551859348 - - PREDICTED: uncharacterized protein LOC104236681 [Nicotiana sylvestris]
14 Hb_163950_010 0.355409969 - - -
15 Hb_001268_400 0.3566172581 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
16 Hb_001799_080 0.3569010292 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
17 Hb_001190_090 0.3605469146 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
18 Hb_005714_110 0.3612554395 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA10 [Jatropha curcas]
19 Hb_001391_140 0.3626910448 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]
20 Hb_001141_480 0.3674230453 - - -

Gene co-expression network

sample Hb_004195_250 Hb_004195_250 Hb_165666_010 Hb_165666_010 Hb_004195_250--Hb_165666_010 Hb_000368_080 Hb_000368_080 Hb_004195_250--Hb_000368_080 Hb_148122_010 Hb_148122_010 Hb_004195_250--Hb_148122_010 Hb_006586_010 Hb_006586_010 Hb_004195_250--Hb_006586_010 Hb_000483_420 Hb_000483_420 Hb_004195_250--Hb_000483_420 Hb_004460_010 Hb_004460_010 Hb_004195_250--Hb_004460_010 Hb_165666_010--Hb_000368_080 Hb_000866_150 Hb_000866_150 Hb_165666_010--Hb_000866_150 Hb_001304_100 Hb_001304_100 Hb_165666_010--Hb_001304_100 Hb_003688_080 Hb_003688_080 Hb_165666_010--Hb_003688_080 Hb_001141_480 Hb_001141_480 Hb_165666_010--Hb_001141_480 Hb_000368_080--Hb_006586_010 Hb_000368_080--Hb_003688_080 Hb_148850_010 Hb_148850_010 Hb_000368_080--Hb_148850_010 Hb_001966_010 Hb_001966_010 Hb_000368_080--Hb_001966_010 Hb_009812_020 Hb_009812_020 Hb_148122_010--Hb_009812_020 Hb_163950_010 Hb_163950_010 Hb_148122_010--Hb_163950_010 Hb_008014_070 Hb_008014_070 Hb_148122_010--Hb_008014_070 Hb_001437_240 Hb_001437_240 Hb_148122_010--Hb_001437_240 Hb_003209_060 Hb_003209_060 Hb_148122_010--Hb_003209_060 Hb_000003_840 Hb_000003_840 Hb_148122_010--Hb_000003_840 Hb_006586_010--Hb_001966_010 Hb_007757_140 Hb_007757_140 Hb_006586_010--Hb_007757_140 Hb_001190_090 Hb_001190_090 Hb_006586_010--Hb_001190_090 Hb_002118_040 Hb_002118_040 Hb_006586_010--Hb_002118_040 Hb_000576_040 Hb_000576_040 Hb_000483_420--Hb_000576_040 Hb_002739_110 Hb_002739_110 Hb_000483_420--Hb_002739_110 Hb_152439_020 Hb_152439_020 Hb_000483_420--Hb_152439_020 Hb_000193_250 Hb_000193_250 Hb_000483_420--Hb_000193_250 Hb_004324_350 Hb_004324_350 Hb_000483_420--Hb_004324_350 Hb_000249_130 Hb_000249_130 Hb_000483_420--Hb_000249_130 Hb_013818_060 Hb_013818_060 Hb_004460_010--Hb_013818_060 Hb_001799_080 Hb_001799_080 Hb_004460_010--Hb_001799_080 Hb_000120_120 Hb_000120_120 Hb_004460_010--Hb_000120_120 Hb_011360_080 Hb_011360_080 Hb_004460_010--Hb_011360_080 Hb_003599_070 Hb_003599_070 Hb_004460_010--Hb_003599_070 Hb_000477_080 Hb_000477_080 Hb_004460_010--Hb_000477_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0558427 0.0233813 0 0 0.0560693 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0504719 0.183217 0 0

CAGE analysis