Hb_143397_010

Information

Type -
Description -
Location Contig143397: 2-613
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012075840.1
description PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_143397_010 0.0 - - PREDICTED: uncharacterized protein LOC105637052 [Jatropha curcas]
2 Hb_001304_100 0.2687269279 - - -
3 Hb_008707_030 0.2767681747 - - PREDICTED: uncharacterized protein LOC104447982 [Eucalyptus grandis]
4 Hb_001902_020 0.27682109 - - -
5 Hb_104812_030 0.2772280788 - - hypothetical protein POPTR_0178s00210g [Populus trichocarpa]
6 Hb_007810_050 0.2826312099 - - protein with unknown function [Ricinus communis]
7 Hb_032264_130 0.2863864212 - - hypothetical protein JCGZ_02516 [Jatropha curcas]
8 Hb_010098_070 0.2971184705 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003069_020 0.297902035 - - conserved hypothetical protein [Ricinus communis]
10 Hb_095471_010 0.2998773921 - - PREDICTED: putative sodium-coupled neutral amino acid transporter 7 [Jatropha curcas]
11 Hb_002477_230 0.3005889248 - - PREDICTED: verprolin [Jatropha curcas]
12 Hb_023610_010 0.3019140585 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000789_190 0.305019219 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
14 Hb_000127_020 0.3050612277 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]
15 Hb_011639_070 0.3083853767 - - PREDICTED: uncharacterized protein LOC105636024 isoform X2 [Jatropha curcas]
16 Hb_002843_160 0.3137092994 - - PREDICTED: leucine-rich repeat receptor-like protein kinase PEPR1 [Jatropha curcas]
17 Hb_003253_010 0.3159582708 - - PREDICTED: uncharacterized protein LOC105111108 [Populus euphratica]
18 Hb_030736_010 0.3181962824 - - conserved hypothetical protein [Ricinus communis]
19 Hb_053262_010 0.3183314948 - - -
20 Hb_019654_080 0.3188165925 - - -

Gene co-expression network

sample Hb_143397_010 Hb_143397_010 Hb_001304_100 Hb_001304_100 Hb_143397_010--Hb_001304_100 Hb_008707_030 Hb_008707_030 Hb_143397_010--Hb_008707_030 Hb_001902_020 Hb_001902_020 Hb_143397_010--Hb_001902_020 Hb_104812_030 Hb_104812_030 Hb_143397_010--Hb_104812_030 Hb_007810_050 Hb_007810_050 Hb_143397_010--Hb_007810_050 Hb_032264_130 Hb_032264_130 Hb_143397_010--Hb_032264_130 Hb_165666_010 Hb_165666_010 Hb_001304_100--Hb_165666_010 Hb_003688_080 Hb_003688_080 Hb_001304_100--Hb_003688_080 Hb_001892_120 Hb_001892_120 Hb_001304_100--Hb_001892_120 Hb_010232_010 Hb_010232_010 Hb_001304_100--Hb_010232_010 Hb_070926_010 Hb_070926_010 Hb_001304_100--Hb_070926_010 Hb_095471_010 Hb_095471_010 Hb_008707_030--Hb_095471_010 Hb_129067_010 Hb_129067_010 Hb_008707_030--Hb_129067_010 Hb_151628_010 Hb_151628_010 Hb_008707_030--Hb_151628_010 Hb_088542_010 Hb_088542_010 Hb_008707_030--Hb_088542_010 Hb_123104_010 Hb_123104_010 Hb_008707_030--Hb_123104_010 Hb_001903_080 Hb_001903_080 Hb_001902_020--Hb_001903_080 Hb_011639_070 Hb_011639_070 Hb_001902_020--Hb_011639_070 Hb_002498_200 Hb_002498_200 Hb_001902_020--Hb_002498_200 Hb_001902_020--Hb_008707_030 Hb_001055_040 Hb_001055_040 Hb_001902_020--Hb_001055_040 Hb_023610_010 Hb_023610_010 Hb_104812_030--Hb_023610_010 Hb_130177_010 Hb_130177_010 Hb_104812_030--Hb_130177_010 Hb_000815_100 Hb_000815_100 Hb_104812_030--Hb_000815_100 Hb_007547_040 Hb_007547_040 Hb_104812_030--Hb_007547_040 Hb_006029_020 Hb_006029_020 Hb_104812_030--Hb_006029_020 Hb_005657_010 Hb_005657_010 Hb_104812_030--Hb_005657_010 Hb_003253_010 Hb_003253_010 Hb_007810_050--Hb_003253_010 Hb_002477_230 Hb_002477_230 Hb_007810_050--Hb_002477_230 Hb_003777_070 Hb_003777_070 Hb_007810_050--Hb_003777_070 Hb_010098_080 Hb_010098_080 Hb_007810_050--Hb_010098_080 Hb_001980_020 Hb_001980_020 Hb_007810_050--Hb_001980_020 Hb_175445_010 Hb_175445_010 Hb_007810_050--Hb_175445_010 Hb_002388_060 Hb_002388_060 Hb_032264_130--Hb_002388_060 Hb_011616_030 Hb_011616_030 Hb_032264_130--Hb_011616_030 Hb_053262_010 Hb_053262_010 Hb_032264_130--Hb_053262_010 Hb_019936_010 Hb_019936_010 Hb_032264_130--Hb_019936_010 Hb_007545_210 Hb_007545_210 Hb_032264_130--Hb_007545_210 Hb_170116_010 Hb_170116_010 Hb_032264_130--Hb_170116_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.403067 0 0 0 0.159735 0.0508014
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.104074 0.176599 0.0432331 0

CAGE analysis