Hb_001817_020

Information

Type -
Description -
Location Contig1817: 21064-24745
Sequence    

Annotation

kegg
ID rcu:RCOM_0993070
description hypothetical protein
nr
ID XP_012092081.1
description PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
swissprot
ID Q0V7S6
description F-box/kelch-repeat protein OR23 OS=Arabidopsis thaliana GN=OR23 PE=2 SV=1
trembl
ID A0A067JBX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21807 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17657: 22316-22690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001817_020 0.0 - - PREDICTED: F-box/kelch-repeat protein OR23 [Jatropha curcas]
2 Hb_001493_180 0.098763097 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
3 Hb_001090_050 0.1034070207 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
4 Hb_000010_340 0.1052525625 - - PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic [Jatropha curcas]
5 Hb_000059_050 0.1195695453 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
6 Hb_000260_570 0.1200645941 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_015198_020 0.1239616663 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000883_060 0.1278586899 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3-like [Jatropha curcas]
9 Hb_000047_030 0.1336502012 - - tfiif-alpha, putative [Ricinus communis]
10 Hb_005162_070 0.1346024268 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000865_060 0.1356455112 transcription factor TF Family: FAR1 hypothetical protein CISIN_1g043648mg [Citrus sinensis]
12 Hb_004079_030 0.136004097 - - PREDICTED: uncharacterized protein LOC105637701 isoform X2 [Jatropha curcas]
13 Hb_002307_170 0.1454712852 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
14 Hb_004785_140 0.1471221867 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X2 [Jatropha curcas]
15 Hb_001946_330 0.1472869312 - - PREDICTED: transmembrane protein 128 [Jatropha curcas]
16 Hb_001430_070 0.1479940739 - - conserved hypothetical protein [Ricinus communis]
17 Hb_030565_030 0.148077108 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
18 Hb_034013_020 0.1497988421 - - PREDICTED: protein trichome birefringence-like 11 [Jatropha curcas]
19 Hb_000359_010 0.1520012724 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
20 Hb_003992_170 0.1524985366 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14-like [Populus euphratica]

Gene co-expression network

sample Hb_001817_020 Hb_001817_020 Hb_001493_180 Hb_001493_180 Hb_001817_020--Hb_001493_180 Hb_001090_050 Hb_001090_050 Hb_001817_020--Hb_001090_050 Hb_000010_340 Hb_000010_340 Hb_001817_020--Hb_000010_340 Hb_000059_050 Hb_000059_050 Hb_001817_020--Hb_000059_050 Hb_000260_570 Hb_000260_570 Hb_001817_020--Hb_000260_570 Hb_015198_020 Hb_015198_020 Hb_001817_020--Hb_015198_020 Hb_001493_180--Hb_001090_050 Hb_001493_180--Hb_000260_570 Hb_005162_070 Hb_005162_070 Hb_001493_180--Hb_005162_070 Hb_001189_050 Hb_001189_050 Hb_001493_180--Hb_001189_050 Hb_011030_020 Hb_011030_020 Hb_001493_180--Hb_011030_020 Hb_004846_070 Hb_004846_070 Hb_001090_050--Hb_004846_070 Hb_001090_050--Hb_000260_570 Hb_011242_040 Hb_011242_040 Hb_001090_050--Hb_011242_040 Hb_000865_060 Hb_000865_060 Hb_001090_050--Hb_000865_060 Hb_001090_050--Hb_005162_070 Hb_000883_060 Hb_000883_060 Hb_000010_340--Hb_000883_060 Hb_006711_100 Hb_006711_100 Hb_000010_340--Hb_006711_100 Hb_000352_190 Hb_000352_190 Hb_000010_340--Hb_000352_190 Hb_000913_020 Hb_000913_020 Hb_000010_340--Hb_000913_020 Hb_000471_110 Hb_000471_110 Hb_000010_340--Hb_000471_110 Hb_004079_030 Hb_004079_030 Hb_000059_050--Hb_004079_030 Hb_003992_170 Hb_003992_170 Hb_000059_050--Hb_003992_170 Hb_119600_070 Hb_119600_070 Hb_000059_050--Hb_119600_070 Hb_001946_330 Hb_001946_330 Hb_000059_050--Hb_001946_330 Hb_000066_080 Hb_000066_080 Hb_000059_050--Hb_000066_080 Hb_000047_030 Hb_000047_030 Hb_000059_050--Hb_000047_030 Hb_000260_570--Hb_005162_070 Hb_002027_040 Hb_002027_040 Hb_000260_570--Hb_002027_040 Hb_010608_050 Hb_010608_050 Hb_000260_570--Hb_010608_050 Hb_000617_150 Hb_000617_150 Hb_000260_570--Hb_000617_150 Hb_000574_390 Hb_000574_390 Hb_015198_020--Hb_000574_390 Hb_015198_020--Hb_000047_030 Hb_015198_020--Hb_011242_040 Hb_013405_030 Hb_013405_030 Hb_015198_020--Hb_013405_030 Hb_003142_020 Hb_003142_020 Hb_015198_020--Hb_003142_020 Hb_001898_160 Hb_001898_160 Hb_015198_020--Hb_001898_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79818 2.36221 1.44452 3.86699 4.44883 4.94171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.46271 4.22386 16.8326 2.96757 8.75916

CAGE analysis