Hb_000046_160

Information

Type -
Description -
Location Contig46: 122360-122677
Sequence    

Annotation

kegg
ID gmx:100815792
description pentatricopeptide repeat-containing protein At2g36980, mitochondrial-like
nr
ID KHN03010.1
description Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
swissprot
ID -
description -
trembl
ID A0A0B2P133
description Pentatricopeptide repeat-containing protein, mitochondrial OS=Glycine soja GN=glysoja_009876 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000046_160 0.0 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
2 Hb_004324_080 0.1959710013 - - -
3 Hb_026239_010 0.2254363422 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_020334_010 0.2648042554 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_000608_460 0.2728447816 - - -
6 Hb_011484_010 0.2730177684 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_061802_010 0.275254059 - - hypothetical protein VITISV_011986 [Vitis vinifera]
8 Hb_004734_050 0.2786589535 - - -
9 Hb_181240_010 0.2788267125 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_004448_060 0.2875617402 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001969_010 0.2965590141 - - PREDICTED: probable protein Pop3 [Nelumbo nucifera]
12 Hb_000258_450 0.2984171525 - - -
13 Hb_002876_370 0.3003385881 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
14 Hb_054865_140 0.3035037398 - - -
15 Hb_005344_030 0.3036352157 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
16 Hb_008931_010 0.3046323269 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
17 Hb_014568_020 0.3106154444 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
18 Hb_000530_120 0.3121914244 - - copper transport protein ATOX1 [Hevea brasiliensis]
19 Hb_002809_150 0.312953206 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
20 Hb_000210_220 0.3129858905 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]

Gene co-expression network

sample Hb_000046_160 Hb_000046_160 Hb_004324_080 Hb_004324_080 Hb_000046_160--Hb_004324_080 Hb_026239_010 Hb_026239_010 Hb_000046_160--Hb_026239_010 Hb_020334_010 Hb_020334_010 Hb_000046_160--Hb_020334_010 Hb_000608_460 Hb_000608_460 Hb_000046_160--Hb_000608_460 Hb_011484_010 Hb_011484_010 Hb_000046_160--Hb_011484_010 Hb_061802_010 Hb_061802_010 Hb_000046_160--Hb_061802_010 Hb_181240_010 Hb_181240_010 Hb_004324_080--Hb_181240_010 Hb_004324_080--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_004324_080--Hb_003005_040 Hb_004734_050 Hb_004734_050 Hb_004324_080--Hb_004734_050 Hb_014568_020 Hb_014568_020 Hb_004324_080--Hb_014568_020 Hb_026239_010--Hb_020334_010 Hb_026239_010--Hb_011484_010 Hb_026239_010--Hb_061802_010 Hb_001357_010 Hb_001357_010 Hb_026239_010--Hb_001357_010 Hb_001294_010 Hb_001294_010 Hb_026239_010--Hb_001294_010 Hb_020334_010--Hb_011484_010 Hb_020334_010--Hb_001357_010 Hb_069251_010 Hb_069251_010 Hb_020334_010--Hb_069251_010 Hb_029510_040 Hb_029510_040 Hb_020334_010--Hb_029510_040 Hb_020334_010--Hb_061802_010 Hb_000608_460--Hb_014568_020 Hb_002888_010 Hb_002888_010 Hb_000608_460--Hb_002888_010 Hb_000915_030 Hb_000915_030 Hb_000608_460--Hb_000915_030 Hb_000608_460--Hb_181240_010 Hb_004448_060 Hb_004448_060 Hb_000608_460--Hb_004448_060 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_011484_010--Hb_061802_010 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136136 0 0 0 0 0.127703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.324615 0.510805 0.373923 0 0.407238

CAGE analysis