Hb_000363_150

Information

Type -
Description -
Location Contig363: 109989-111940
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09040g
description POPTRDRAFT_771436; hypothetical protein
nr
ID XP_002316760.1
description hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
swissprot
ID Q9SJQ1
description Leucine-rich repeat receptor-like protein kinase PXC1 OS=Arabidopsis thaliana GN=PXC1 PE=2 SV=1
trembl
ID B9I164
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s09040g PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive receptor kinase at2g26730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_150 0.0 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
2 Hb_000111_010 0.1719141183 - - DNA-directed RNA polymerase, putative [Ricinus communis]
3 Hb_000856_370 0.174069475 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
4 Hb_012053_040 0.1946732192 - - PREDICTED: putative phospholipid:diacylglycerol acyltransferase 2 [Jatropha curcas]
5 Hb_088538_010 0.2084951591 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
6 Hb_000227_200 0.2105286169 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
7 Hb_001158_190 0.2107357306 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
8 Hb_000788_080 0.2158180442 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
9 Hb_001741_040 0.2237034694 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
10 Hb_004064_020 0.2245476614 - - hypothetical protein M569_06853, partial [Genlisea aurea]
11 Hb_001425_050 0.225864311 - - -
12 Hb_010174_070 0.2267818815 - - -
13 Hb_001780_140 0.2282383679 - - Uncharacterized protein isoform 1 [Theobroma cacao]
14 Hb_002045_200 0.2290102147 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
15 Hb_001902_120 0.2320960398 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
16 Hb_000450_020 0.2357403629 - - conserved hypothetical protein [Ricinus communis]
17 Hb_006342_020 0.2385164761 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_010931_050 0.2398171028 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
19 Hb_001511_140 0.2408467933 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
20 Hb_000084_320 0.2423245398 - - PREDICTED: probable small nuclear ribonucleoprotein G [Populus euphratica]

Gene co-expression network

sample Hb_000363_150 Hb_000363_150 Hb_000111_010 Hb_000111_010 Hb_000363_150--Hb_000111_010 Hb_000856_370 Hb_000856_370 Hb_000363_150--Hb_000856_370 Hb_012053_040 Hb_012053_040 Hb_000363_150--Hb_012053_040 Hb_088538_010 Hb_088538_010 Hb_000363_150--Hb_088538_010 Hb_000227_200 Hb_000227_200 Hb_000363_150--Hb_000227_200 Hb_001158_190 Hb_001158_190 Hb_000363_150--Hb_001158_190 Hb_000788_080 Hb_000788_080 Hb_000111_010--Hb_000788_080 Hb_000111_010--Hb_012053_040 Hb_091433_040 Hb_091433_040 Hb_000111_010--Hb_091433_040 Hb_005914_070 Hb_005914_070 Hb_000111_010--Hb_005914_070 Hb_000103_110 Hb_000103_110 Hb_000111_010--Hb_000103_110 Hb_001741_040 Hb_001741_040 Hb_000856_370--Hb_001741_040 Hb_003599_070 Hb_003599_070 Hb_000856_370--Hb_003599_070 Hb_000856_370--Hb_000227_200 Hb_042223_010 Hb_042223_010 Hb_000856_370--Hb_042223_010 Hb_000856_370--Hb_000111_010 Hb_007426_050 Hb_007426_050 Hb_012053_040--Hb_007426_050 Hb_001511_140 Hb_001511_140 Hb_012053_040--Hb_001511_140 Hb_012053_040--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_012053_040--Hb_001776_170 Hb_001143_070 Hb_001143_070 Hb_012053_040--Hb_001143_070 Hb_148209_060 Hb_148209_060 Hb_088538_010--Hb_148209_060 Hb_000545_170 Hb_000545_170 Hb_088538_010--Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_002045_200 Hb_002045_200 Hb_088538_010--Hb_002045_200 Hb_000784_040 Hb_000784_040 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_000227_200--Hb_005914_070 Hb_000227_200--Hb_001741_040 Hb_000227_200--Hb_091433_040 Hb_000227_200--Hb_042223_010 Hb_010931_050 Hb_010931_050 Hb_001158_190--Hb_010931_050 Hb_000749_240 Hb_000749_240 Hb_001158_190--Hb_000749_240 Hb_001158_190--Hb_001511_140 Hb_001158_190--Hb_088538_010 Hb_001158_190--Hb_000788_080 Hb_000261_450 Hb_000261_450 Hb_001158_190--Hb_000261_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0215213 0.00888751 0.00799011 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.318089 0.385037 0.58293 0.0383239 0.081191

CAGE analysis