Hb_000856_370

Information

Type -
Description -
Location Contig856: 334342-335437
Sequence    

Annotation

kegg
ID rcu:RCOM_0911430
description protein binding protein, putative
nr
ID XP_012069686.1
description PREDICTED: protein NETWORKED 1A [Jatropha curcas]
swissprot
ID Q9LUI2
description Protein NETWORKED 1A OS=Arabidopsis thaliana GN=NET1A PE=1 SV=1
trembl
ID A0A067KZ63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02216 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_370 0.0 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
2 Hb_000363_150 0.174069475 - - hypothetical protein POPTR_0011s09040g [Populus trichocarpa]
3 Hb_001741_040 0.2025042672 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
4 Hb_003599_070 0.21693094 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_000227_200 0.2223455572 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
6 Hb_042223_010 0.2224806437 - - Protein Z, putative [Ricinus communis]
7 Hb_000111_010 0.2401708656 - - DNA-directed RNA polymerase, putative [Ricinus communis]
8 Hb_003913_140 0.2450692684 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
9 Hb_000784_040 0.2463138421 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
10 Hb_000141_030 0.2481260958 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
11 Hb_000042_240 0.2488553549 - - -
12 Hb_000103_110 0.2493754328 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
13 Hb_003286_020 0.2552376689 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
14 Hb_173281_010 0.256989329 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
15 Hb_010174_070 0.2570609502 - - -
16 Hb_000172_570 0.2638945014 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
17 Hb_001902_120 0.2643311622 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
18 Hb_010931_050 0.2653404681 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like [Jatropha curcas]
19 Hb_001158_190 0.2689336063 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
20 Hb_001638_210 0.2699939037 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000856_370 Hb_000856_370 Hb_000363_150 Hb_000363_150 Hb_000856_370--Hb_000363_150 Hb_001741_040 Hb_001741_040 Hb_000856_370--Hb_001741_040 Hb_003599_070 Hb_003599_070 Hb_000856_370--Hb_003599_070 Hb_000227_200 Hb_000227_200 Hb_000856_370--Hb_000227_200 Hb_042223_010 Hb_042223_010 Hb_000856_370--Hb_042223_010 Hb_000111_010 Hb_000111_010 Hb_000856_370--Hb_000111_010 Hb_000363_150--Hb_000111_010 Hb_012053_040 Hb_012053_040 Hb_000363_150--Hb_012053_040 Hb_088538_010 Hb_088538_010 Hb_000363_150--Hb_088538_010 Hb_000363_150--Hb_000227_200 Hb_001158_190 Hb_001158_190 Hb_000363_150--Hb_001158_190 Hb_003913_140 Hb_003913_140 Hb_001741_040--Hb_003913_140 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_002450_070 Hb_002450_070 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_000141_030 Hb_000141_030 Hb_003599_070--Hb_000141_030 Hb_000368_060 Hb_000368_060 Hb_003599_070--Hb_000368_060 Hb_003599_070--Hb_000972_010 Hb_003599_070--Hb_000103_110 Hb_000784_040 Hb_000784_040 Hb_003599_070--Hb_000784_040 Hb_000172_570 Hb_000172_570 Hb_003599_070--Hb_000172_570 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_000227_200--Hb_042223_010 Hb_156473_010 Hb_156473_010 Hb_042223_010--Hb_156473_010 Hb_100873_030 Hb_100873_030 Hb_042223_010--Hb_100873_030 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_042223_010--Hb_001587_210 Hb_042223_010--Hb_000784_040 Hb_000788_080 Hb_000788_080 Hb_000111_010--Hb_000788_080 Hb_000111_010--Hb_012053_040 Hb_000111_010--Hb_091433_040 Hb_000111_010--Hb_005914_070 Hb_000111_010--Hb_000103_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130472 0 0.0993254 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.90878 0.555506 1.94313 0.0650888 0.153577

CAGE analysis