Hb_000258_450

Information

Type -
Description -
Location Contig258: 415213-416732
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26863: 415443-415828
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000258_450 0.0 - - -
2 Hb_004448_060 0.2224219382 - - conserved hypothetical protein [Ricinus communis]
3 Hb_162033_010 0.2329396505 - - -
4 Hb_004218_210 0.2424795682 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
5 Hb_000906_130 0.2477140375 - - -
6 Hb_001863_420 0.2543948999 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
7 Hb_003124_060 0.2563388605 - - Beta-ureidopropionase, putative [Ricinus communis]
8 Hb_000530_120 0.2572211158 - - copper transport protein ATOX1 [Hevea brasiliensis]
9 Hb_001159_200 0.2610930912 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
10 Hb_006738_010 0.2632610248 - - PREDICTED: uncharacterized protein LOC105634993 [Jatropha curcas]
11 Hb_006342_020 0.2661510555 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_004567_020 0.2698742195 - - Small ubiquitin-related modifier 2 [Morus notabilis]
13 Hb_011484_010 0.2699537976 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000281_230 0.2778300629 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
15 Hb_004734_050 0.2779461998 - - -
16 Hb_003086_060 0.2785727986 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
17 Hb_003784_050 0.2785963945 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
18 Hb_115940_010 0.2796120468 - - putative auxin-amidohydrolase precursor family protein [Populus trichocarpa]
19 Hb_008931_010 0.2801639268 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
20 Hb_101133_020 0.2804998499 - - PREDICTED: 15.7 kDa heat shock protein, peroxisomal [Jatropha curcas]

Gene co-expression network

sample Hb_000258_450 Hb_000258_450 Hb_004448_060 Hb_004448_060 Hb_000258_450--Hb_004448_060 Hb_162033_010 Hb_162033_010 Hb_000258_450--Hb_162033_010 Hb_004218_210 Hb_004218_210 Hb_000258_450--Hb_004218_210 Hb_000906_130 Hb_000906_130 Hb_000258_450--Hb_000906_130 Hb_001863_420 Hb_001863_420 Hb_000258_450--Hb_001863_420 Hb_003124_060 Hb_003124_060 Hb_000258_450--Hb_003124_060 Hb_004734_050 Hb_004734_050 Hb_004448_060--Hb_004734_050 Hb_006342_020 Hb_006342_020 Hb_004448_060--Hb_006342_020 Hb_000608_460 Hb_000608_460 Hb_004448_060--Hb_000608_460 Hb_000915_030 Hb_000915_030 Hb_004448_060--Hb_000915_030 Hb_007904_170 Hb_007904_170 Hb_004448_060--Hb_007904_170 Hb_000258_100 Hb_000258_100 Hb_162033_010--Hb_000258_100 Hb_054865_140 Hb_054865_140 Hb_162033_010--Hb_054865_140 Hb_000270_610 Hb_000270_610 Hb_162033_010--Hb_000270_610 Hb_124567_020 Hb_124567_020 Hb_162033_010--Hb_124567_020 Hb_101133_020 Hb_101133_020 Hb_162033_010--Hb_101133_020 Hb_000613_160 Hb_000613_160 Hb_004218_210--Hb_000613_160 Hb_000453_300 Hb_000453_300 Hb_004218_210--Hb_000453_300 Hb_000575_020 Hb_000575_020 Hb_004218_210--Hb_000575_020 Hb_088538_010 Hb_088538_010 Hb_004218_210--Hb_088538_010 Hb_001507_070 Hb_001507_070 Hb_004218_210--Hb_001507_070 Hb_011004_010 Hb_011004_010 Hb_004218_210--Hb_011004_010 Hb_000906_130--Hb_003124_060 Hb_000731_250 Hb_000731_250 Hb_000906_130--Hb_000731_250 Hb_000084_320 Hb_000084_320 Hb_000906_130--Hb_000084_320 Hb_000906_130--Hb_088538_010 Hb_005224_030 Hb_005224_030 Hb_000906_130--Hb_005224_030 Hb_000906_130--Hb_004734_050 Hb_002918_140 Hb_002918_140 Hb_001863_420--Hb_002918_140 Hb_001386_050 Hb_001386_050 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_001163_090 Hb_001163_090 Hb_003124_060--Hb_001163_090 Hb_000281_230 Hb_000281_230 Hb_003124_060--Hb_000281_230 Hb_003124_060--Hb_006342_020 Hb_003124_060--Hb_004734_050 Hb_115940_010 Hb_115940_010 Hb_003124_060--Hb_115940_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.167945 0.136245 0 0 0.0613916 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07323 1.56563 0.601467 0.100968 0.662744

CAGE analysis