Hb_054865_140

Information

Type -
Description -
Location Contig54865: 119465-119767
Sequence    

Annotation

kegg
ID rcu:RCOM_0131360
description hypothetical protein
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48094: 118339-118877 , PASA_asmbl_48095: 119358-119753
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_140 0.0 - - -
2 Hb_000935_030 0.2329965875 - - Squalene monooxygenase, putative [Ricinus communis]
3 Hb_162033_010 0.2415517048 - - -
4 Hb_003336_030 0.24761579 - - transcription factor, putative [Ricinus communis]
5 Hb_005649_020 0.2521109996 - - PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
6 Hb_000390_110 0.2581972396 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
7 Hb_000208_120 0.2608577733 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
8 Hb_000160_300 0.2672312261 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
9 Hb_005496_150 0.2721718579 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
10 Hb_009485_010 0.2747442314 - - PREDICTED: uncharacterized protein LOC105641071 [Jatropha curcas]
11 Hb_001828_080 0.2768147526 - - glyceraldehyde 3-phosphate dehydrogenase family protein [Populus trichocarpa]
12 Hb_003052_060 0.2782223412 - - PREDICTED: uncharacterized protein LOC105640717 [Jatropha curcas]
13 Hb_005344_030 0.2784254924 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
14 Hb_004162_260 0.279416486 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
15 Hb_011671_390 0.2800527708 - - peptide methionine sulfoxide reductase A1-like [Jatropha curcas]
16 Hb_000008_360 0.2821327587 - - hypothetical protein POPTR_0004s22050g [Populus trichocarpa]
17 Hb_024714_050 0.285351717 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
18 Hb_101832_010 0.2866750583 - - nitrate transporter, putative [Ricinus communis]
19 Hb_185447_010 0.2879159654 - - hypothetical protein JCGZ_13512 [Jatropha curcas]
20 Hb_000367_100 0.2881215792 - - BnaA05g32070D [Brassica napus]

Gene co-expression network

sample Hb_054865_140 Hb_054865_140 Hb_000935_030 Hb_000935_030 Hb_054865_140--Hb_000935_030 Hb_162033_010 Hb_162033_010 Hb_054865_140--Hb_162033_010 Hb_003336_030 Hb_003336_030 Hb_054865_140--Hb_003336_030 Hb_005649_020 Hb_005649_020 Hb_054865_140--Hb_005649_020 Hb_000390_110 Hb_000390_110 Hb_054865_140--Hb_000390_110 Hb_000208_120 Hb_000208_120 Hb_054865_140--Hb_000208_120 Hb_000384_130 Hb_000384_130 Hb_000935_030--Hb_000384_130 Hb_011671_390 Hb_011671_390 Hb_000935_030--Hb_011671_390 Hb_000012_130 Hb_000012_130 Hb_000935_030--Hb_000012_130 Hb_015057_060 Hb_015057_060 Hb_000935_030--Hb_015057_060 Hb_000035_430 Hb_000035_430 Hb_000935_030--Hb_000035_430 Hb_000935_030--Hb_003336_030 Hb_000258_100 Hb_000258_100 Hb_162033_010--Hb_000258_100 Hb_000258_450 Hb_000258_450 Hb_162033_010--Hb_000258_450 Hb_000270_610 Hb_000270_610 Hb_162033_010--Hb_000270_610 Hb_124567_020 Hb_124567_020 Hb_162033_010--Hb_124567_020 Hb_101133_020 Hb_101133_020 Hb_162033_010--Hb_101133_020 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140 Hb_003666_030 Hb_003666_030 Hb_005649_020--Hb_003666_030 Hb_001427_200 Hb_001427_200 Hb_005649_020--Hb_001427_200 Hb_006694_020 Hb_006694_020 Hb_005649_020--Hb_006694_020 Hb_000031_090 Hb_000031_090 Hb_005649_020--Hb_000031_090 Hb_005649_020--Hb_003336_030 Hb_001476_070 Hb_001476_070 Hb_005649_020--Hb_001476_070 Hb_000008_360 Hb_000008_360 Hb_000390_110--Hb_000008_360 Hb_002836_120 Hb_002836_120 Hb_000390_110--Hb_002836_120 Hb_000575_030 Hb_000575_030 Hb_000390_110--Hb_000575_030 Hb_000622_240 Hb_000622_240 Hb_000390_110--Hb_000622_240 Hb_001435_020 Hb_001435_020 Hb_000390_110--Hb_001435_020 Hb_014834_130 Hb_014834_130 Hb_000390_110--Hb_014834_130 Hb_185447_010 Hb_185447_010 Hb_000208_120--Hb_185447_010 Hb_000505_010 Hb_000505_010 Hb_000208_120--Hb_000505_010 Hb_001898_160 Hb_001898_160 Hb_000208_120--Hb_001898_160 Hb_002284_310 Hb_002284_310 Hb_000208_120--Hb_002284_310 Hb_000270_260 Hb_000270_260 Hb_000208_120--Hb_000270_260 Hb_000735_130 Hb_000735_130 Hb_000208_120--Hb_000735_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.24549 0 0.805311 0 0.314102 0.145444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82533 1.72497 1.23286 0 1.78585

CAGE analysis