Hb_005649_020

Information

Type -
Description -
Location Contig5649: 13957-18089
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12960g
description POPTRDRAFT_668664; hypothetical protein
nr
ID XP_012084825.1
description PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
swissprot
ID Q8L9Y0
description Serine carboxypeptidase-like 25 OS=Arabidopsis thaliana GN=SCPL25 PE=2 SV=2
trembl
ID A0A067JWU7
description Carboxypeptidase OS=Jatropha curcas GN=JCGZ_19942 PE=3 SV=1
Gene Ontology
ID GO:0004185
description serine carboxypeptidase-like 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005649_020 0.0 - - PREDICTED: serine carboxypeptidase-like 25 [Jatropha curcas]
2 Hb_003666_030 0.1892648414 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
3 Hb_001427_200 0.1925057334 - - PREDICTED: uncharacterized protein LOC105637796 [Jatropha curcas]
4 Hb_006694_020 0.1962014588 - - PREDICTED: auxin response factor 2-like isoform X2 [Nicotiana tomentosiformis]
5 Hb_000031_090 0.1982227903 - - PREDICTED: pentatricopeptide repeat-containing protein At5g10690 [Jatropha curcas]
6 Hb_003336_030 0.2001159283 - - transcription factor, putative [Ricinus communis]
7 Hb_001476_070 0.2014512651 - - MinE protein [Manihot esculenta]
8 Hb_101832_010 0.2045248707 - - nitrate transporter, putative [Ricinus communis]
9 Hb_003683_120 0.2055288628 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005496_150 0.2065163362 - - PREDICTED: cyclin-D5-1-like [Jatropha curcas]
11 Hb_000887_020 0.2094384666 - - PREDICTED: uncharacterized protein LOC105633527 [Jatropha curcas]
12 Hb_000185_210 0.2094771747 - - PREDICTED: 50S ribosomal protein L13, chloroplastic [Jatropha curcas]
13 Hb_024714_050 0.2135566926 - - hypothetical protein CICLE_v100188992mg, partial [Citrus clementina]
14 Hb_000160_300 0.2168920623 - - hypothetical protein POPTR_0004s08720g [Populus trichocarpa]
15 Hb_000575_030 0.2172915351 - - unnamed protein product [Vitis vinifera]
16 Hb_001053_180 0.2177065838 - - protein binding protein, putative [Ricinus communis]
17 Hb_000390_110 0.2178742862 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
18 Hb_000107_570 0.2180533882 - - PREDICTED: uncharacterized protein LOC105634044 isoform X1 [Jatropha curcas]
19 Hb_000345_390 0.2184639394 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
20 Hb_000127_010 0.2206961721 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]

Gene co-expression network

sample Hb_005649_020 Hb_005649_020 Hb_003666_030 Hb_003666_030 Hb_005649_020--Hb_003666_030 Hb_001427_200 Hb_001427_200 Hb_005649_020--Hb_001427_200 Hb_006694_020 Hb_006694_020 Hb_005649_020--Hb_006694_020 Hb_000031_090 Hb_000031_090 Hb_005649_020--Hb_000031_090 Hb_003336_030 Hb_003336_030 Hb_005649_020--Hb_003336_030 Hb_001476_070 Hb_001476_070 Hb_005649_020--Hb_001476_070 Hb_003666_030--Hb_001427_200 Hb_002811_130 Hb_002811_130 Hb_003666_030--Hb_002811_130 Hb_000107_570 Hb_000107_570 Hb_003666_030--Hb_000107_570 Hb_021576_030 Hb_021576_030 Hb_003666_030--Hb_021576_030 Hb_006117_040 Hb_006117_040 Hb_003666_030--Hb_006117_040 Hb_012675_050 Hb_012675_050 Hb_003666_030--Hb_012675_050 Hb_001268_420 Hb_001268_420 Hb_001427_200--Hb_001268_420 Hb_003683_120 Hb_003683_120 Hb_001427_200--Hb_003683_120 Hb_032264_070 Hb_032264_070 Hb_001427_200--Hb_032264_070 Hb_004195_270 Hb_004195_270 Hb_001427_200--Hb_004195_270 Hb_001105_030 Hb_001105_030 Hb_001427_200--Hb_001105_030 Hb_001427_200--Hb_012675_050 Hb_004837_030 Hb_004837_030 Hb_006694_020--Hb_004837_030 Hb_000030_180 Hb_000030_180 Hb_006694_020--Hb_000030_180 Hb_007763_040 Hb_007763_040 Hb_006694_020--Hb_007763_040 Hb_001234_080 Hb_001234_080 Hb_006694_020--Hb_001234_080 Hb_000679_050 Hb_000679_050 Hb_006694_020--Hb_000679_050 Hb_009694_010 Hb_009694_010 Hb_006694_020--Hb_009694_010 Hb_158092_030 Hb_158092_030 Hb_000031_090--Hb_158092_030 Hb_000723_100 Hb_000723_100 Hb_000031_090--Hb_000723_100 Hb_005433_010 Hb_005433_010 Hb_000031_090--Hb_005433_010 Hb_029695_110 Hb_029695_110 Hb_000031_090--Hb_029695_110 Hb_001097_100 Hb_001097_100 Hb_000031_090--Hb_001097_100 Hb_005276_130 Hb_005276_130 Hb_000031_090--Hb_005276_130 Hb_138585_050 Hb_138585_050 Hb_003336_030--Hb_138585_050 Hb_000320_180 Hb_000320_180 Hb_003336_030--Hb_000320_180 Hb_024714_050 Hb_024714_050 Hb_003336_030--Hb_024714_050 Hb_000210_220 Hb_000210_220 Hb_003336_030--Hb_000210_220 Hb_000272_140 Hb_000272_140 Hb_003336_030--Hb_000272_140 Hb_000169_140 Hb_000169_140 Hb_003336_030--Hb_000169_140 Hb_002477_300 Hb_002477_300 Hb_001476_070--Hb_002477_300 Hb_004934_030 Hb_004934_030 Hb_001476_070--Hb_004934_030 Hb_001998_120 Hb_001998_120 Hb_001476_070--Hb_001998_120 Hb_004449_170 Hb_004449_170 Hb_001476_070--Hb_004449_170 Hb_146673_010 Hb_146673_010 Hb_001476_070--Hb_146673_010 Hb_006360_030 Hb_006360_030 Hb_001476_070--Hb_006360_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.741581 0.0435157 1.2239 0.158017 1.20912 0.515658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99143 1.67111 0.587461 0.0834426 1.47154

CAGE analysis