Hb_124567_020

Information

Type -
Description -
Location Contig124567: 1603-1797
Sequence    

Annotation

kegg
ID rcu:RCOM_0739730
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012092576.1
description PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
swissprot
ID Q9SKQ4
description Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1
trembl
ID B9SQL4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0739730 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_124567_020 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
2 Hb_178968_160 0.1255283679 - - -
3 Hb_000696_220 0.1575554775 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
4 Hb_001863_420 0.174188296 - - PREDICTED: probable protein phosphatase 2C 10, partial [Vitis vinifera]
5 Hb_003181_050 0.1786621121 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
6 Hb_089100_020 0.185963021 - - PREDICTED: cyclin-A1-1 [Jatropha curcas]
7 Hb_002918_140 0.1870019729 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
8 Hb_003043_120 0.1876447969 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000853_240 0.1885997172 - - -
10 Hb_001386_050 0.1929207256 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
11 Hb_001102_250 0.1950111083 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
12 Hb_001159_200 0.1991054059 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
13 Hb_034585_050 0.1992669312 - - -
14 Hb_005841_040 0.1994522088 - - stress-induced hydrophobic peptide 1 [Hevea brasiliensis]
15 Hb_000175_130 0.1996508911 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
16 Hb_000032_350 0.2003945433 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000805_130 0.2010141545 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011689_050 0.2032514512 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
19 Hb_001373_100 0.2055426618 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001785_040 0.206433067 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]

Gene co-expression network

sample Hb_124567_020 Hb_124567_020 Hb_178968_160 Hb_178968_160 Hb_124567_020--Hb_178968_160 Hb_000696_220 Hb_000696_220 Hb_124567_020--Hb_000696_220 Hb_001863_420 Hb_001863_420 Hb_124567_020--Hb_001863_420 Hb_003181_050 Hb_003181_050 Hb_124567_020--Hb_003181_050 Hb_089100_020 Hb_089100_020 Hb_124567_020--Hb_089100_020 Hb_002918_140 Hb_002918_140 Hb_124567_020--Hb_002918_140 Hb_000815_270 Hb_000815_270 Hb_178968_160--Hb_000815_270 Hb_001158_230 Hb_001158_230 Hb_178968_160--Hb_001158_230 Hb_178968_160--Hb_000696_220 Hb_000933_160 Hb_000933_160 Hb_178968_160--Hb_000933_160 Hb_005590_020 Hb_005590_020 Hb_178968_160--Hb_005590_020 Hb_000853_240 Hb_000853_240 Hb_000696_220--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_000696_220--Hb_003198_010 Hb_000696_220--Hb_089100_020 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000963_030 Hb_000963_030 Hb_000696_220--Hb_000963_030 Hb_001386_050 Hb_001386_050 Hb_000696_220--Hb_001386_050 Hb_001863_420--Hb_002918_140 Hb_001863_420--Hb_001386_050 Hb_001159_200 Hb_001159_200 Hb_001863_420--Hb_001159_200 Hb_002105_030 Hb_002105_030 Hb_001863_420--Hb_002105_030 Hb_001369_400 Hb_001369_400 Hb_001863_420--Hb_001369_400 Hb_003086_060 Hb_003086_060 Hb_001863_420--Hb_003086_060 Hb_003181_050--Hb_001386_050 Hb_001785_040 Hb_001785_040 Hb_003181_050--Hb_001785_040 Hb_032969_030 Hb_032969_030 Hb_003181_050--Hb_032969_030 Hb_003181_050--Hb_089100_020 Hb_003181_050--Hb_003198_010 Hb_002802_020 Hb_002802_020 Hb_003181_050--Hb_002802_020 Hb_089100_020--Hb_001785_040 Hb_089100_020--Hb_000853_240 Hb_089100_020--Hb_003198_010 Hb_000191_020 Hb_000191_020 Hb_089100_020--Hb_000191_020 Hb_034585_050 Hb_034585_050 Hb_002918_140--Hb_034585_050 Hb_002918_140--Hb_001386_050 Hb_001017_070 Hb_001017_070 Hb_002918_140--Hb_001017_070 Hb_017862_010 Hb_017862_010 Hb_002918_140--Hb_017862_010 Hb_000676_240 Hb_000676_240 Hb_002918_140--Hb_000676_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94154 0 1.48091 0 1.06847 1.34518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.59734 14.7465 4.29195 0.614577 1.45448

CAGE analysis