Hb_178968_160

Information

Type -
Description -
Location Contig178968: 139194-142328
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_160 0.0 - - -
2 Hb_124567_020 0.1255283679 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
3 Hb_000815_270 0.1762072588 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001158_230 0.1954434079 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
5 Hb_000696_220 0.2041378835 - - PREDICTED: uncharacterized protein LOC105647113 [Jatropha curcas]
6 Hb_000933_160 0.2044222875 - - PREDICTED: uncharacterized protein LOC105630505 [Jatropha curcas]
7 Hb_005590_020 0.2053412646 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
8 Hb_160837_010 0.2056474018 - - -
9 Hb_000645_140 0.2060211236 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A [Nelumbo nucifera]
10 Hb_003043_120 0.2061718676 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000144_110 0.2090599638 - - hypothetical protein CICLE_v10013189mg [Citrus clementina]
12 Hb_019516_100 0.21161342 - - 40S ribosomal protein S14, putative [Ricinus communis]
13 Hb_001300_040 0.2118466811 - - PREDICTED: uncharacterized protein LOC105642466 [Jatropha curcas]
14 Hb_008948_050 0.2122322173 - - hypothetical protein JCGZ_13339 [Jatropha curcas]
15 Hb_001616_020 0.2122716276 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
16 Hb_011689_050 0.2125901013 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
17 Hb_076626_010 0.2128634165 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000805_130 0.2133887331 - - conserved hypothetical protein [Ricinus communis]
19 Hb_009880_010 0.2134862334 - - PREDICTED: cytochrome c [Jatropha curcas]
20 Hb_007944_040 0.2150875196 - - 60S ribosomal protein L18aB [Hevea brasiliensis]

Gene co-expression network

sample Hb_178968_160 Hb_178968_160 Hb_124567_020 Hb_124567_020 Hb_178968_160--Hb_124567_020 Hb_000815_270 Hb_000815_270 Hb_178968_160--Hb_000815_270 Hb_001158_230 Hb_001158_230 Hb_178968_160--Hb_001158_230 Hb_000696_220 Hb_000696_220 Hb_178968_160--Hb_000696_220 Hb_000933_160 Hb_000933_160 Hb_178968_160--Hb_000933_160 Hb_005590_020 Hb_005590_020 Hb_178968_160--Hb_005590_020 Hb_124567_020--Hb_000696_220 Hb_001863_420 Hb_001863_420 Hb_124567_020--Hb_001863_420 Hb_003181_050 Hb_003181_050 Hb_124567_020--Hb_003181_050 Hb_089100_020 Hb_089100_020 Hb_124567_020--Hb_089100_020 Hb_002918_140 Hb_002918_140 Hb_124567_020--Hb_002918_140 Hb_009252_130 Hb_009252_130 Hb_000815_270--Hb_009252_130 Hb_000144_110 Hb_000144_110 Hb_000815_270--Hb_000144_110 Hb_000025_530 Hb_000025_530 Hb_000815_270--Hb_000025_530 Hb_000111_280 Hb_000111_280 Hb_000815_270--Hb_000111_280 Hb_009787_040 Hb_009787_040 Hb_000815_270--Hb_009787_040 Hb_000815_270--Hb_005590_020 Hb_002687_170 Hb_002687_170 Hb_001158_230--Hb_002687_170 Hb_019516_100 Hb_019516_100 Hb_001158_230--Hb_019516_100 Hb_001158_230--Hb_000933_160 Hb_076626_010 Hb_076626_010 Hb_001158_230--Hb_076626_010 Hb_007944_040 Hb_007944_040 Hb_001158_230--Hb_007944_040 Hb_005181_030 Hb_005181_030 Hb_001158_230--Hb_005181_030 Hb_000853_240 Hb_000853_240 Hb_000696_220--Hb_000853_240 Hb_003198_010 Hb_003198_010 Hb_000696_220--Hb_003198_010 Hb_000696_220--Hb_089100_020 Hb_000032_350 Hb_000032_350 Hb_000696_220--Hb_000032_350 Hb_000963_030 Hb_000963_030 Hb_000696_220--Hb_000963_030 Hb_001386_050 Hb_001386_050 Hb_000696_220--Hb_001386_050 Hb_000933_160--Hb_076626_010 Hb_010672_070 Hb_010672_070 Hb_000933_160--Hb_010672_070 Hb_002259_070 Hb_002259_070 Hb_000933_160--Hb_002259_070 Hb_000933_160--Hb_002687_170 Hb_002999_050 Hb_002999_050 Hb_000933_160--Hb_002999_050 Hb_005590_020--Hb_010672_070 Hb_005590_020--Hb_076626_010 Hb_005590_020--Hb_007944_040 Hb_001268_140 Hb_001268_140 Hb_005590_020--Hb_001268_140 Hb_005590_020--Hb_002999_050 Hb_000212_260 Hb_000212_260 Hb_005590_020--Hb_000212_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.175009 0 0.0811997 0 0.0610443 0.056033
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.242797 0.496509 0.14091 0.0767334 0.0783222

CAGE analysis