Hb_004461_020

Information

Type -
Description -
Location Contig4461: 54347-56728
Sequence    

Annotation

kegg
ID pmum:103326132
description uncharacterized LOC103326132
nr
ID XP_009612366.1
description PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
swissprot
ID Q7TD08
description Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1
trembl
ID A0A061DN37
description Uncharacterized protein OS=Theobroma cacao GN=TCM_002794 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004461_020 0.0 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
2 Hb_000103_030 0.1314376575 - - hypothetical protein VITISV_021700 [Vitis vinifera]
3 Hb_001425_070 0.1456542634 - - -
4 Hb_001143_070 0.1531337875 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
5 Hb_001425_050 0.1655276647 - - -
6 Hb_001425_060 0.170143327 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002290_050 0.1799538291 - - conserved hypothetical protein [Ricinus communis]
8 Hb_091433_030 0.1928714557 - - -
9 Hb_002989_040 0.198370026 - - hypothetical protein 1 [Hevea brasiliensis]
10 Hb_052941_010 0.2041563589 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
11 Hb_023051_020 0.2053181442 - - -
12 Hb_034482_040 0.2069239506 - - aspartate kinase, partial [Francisella tularensis]
13 Hb_113635_010 0.2070043592 - - -
14 Hb_005568_010 0.2075083221 - - -
15 Hb_089100_050 0.2083719588 - - -
16 Hb_000450_020 0.2120490582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002326_170 0.2130876916 - - Protein Z, putative [Ricinus communis]
18 Hb_002045_200 0.216053575 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
19 Hb_001348_230 0.2161984338 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
20 Hb_001369_210 0.2173153424 transcription factor TF Family: C2H2 hypothetical protein JCGZ_26269 [Jatropha curcas]

Gene co-expression network

sample Hb_004461_020 Hb_004461_020 Hb_000103_030 Hb_000103_030 Hb_004461_020--Hb_000103_030 Hb_001425_070 Hb_001425_070 Hb_004461_020--Hb_001425_070 Hb_001143_070 Hb_001143_070 Hb_004461_020--Hb_001143_070 Hb_001425_050 Hb_001425_050 Hb_004461_020--Hb_001425_050 Hb_001425_060 Hb_001425_060 Hb_004461_020--Hb_001425_060 Hb_002290_050 Hb_002290_050 Hb_004461_020--Hb_002290_050 Hb_105602_020 Hb_105602_020 Hb_000103_030--Hb_105602_020 Hb_000103_030--Hb_001143_070 Hb_002989_040 Hb_002989_040 Hb_000103_030--Hb_002989_040 Hb_089100_050 Hb_089100_050 Hb_000103_030--Hb_089100_050 Hb_000103_030--Hb_001425_070 Hb_001425_070--Hb_001425_060 Hb_091433_030 Hb_091433_030 Hb_001425_070--Hb_091433_030 Hb_001425_070--Hb_001143_070 Hb_034482_040 Hb_034482_040 Hb_001425_070--Hb_034482_040 Hb_001143_070--Hb_002989_040 Hb_001348_230 Hb_001348_230 Hb_001143_070--Hb_001348_230 Hb_001143_070--Hb_002290_050 Hb_004942_020 Hb_004942_020 Hb_001143_070--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_001143_070--Hb_000352_160 Hb_002045_200 Hb_002045_200 Hb_001425_050--Hb_002045_200 Hb_001902_120 Hb_001902_120 Hb_001425_050--Hb_001902_120 Hb_052941_010 Hb_052941_010 Hb_001425_050--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001425_050--Hb_005568_010 Hb_001425_050--Hb_001425_060 Hb_002326_170 Hb_002326_170 Hb_001425_050--Hb_002326_170 Hb_001425_060--Hb_091433_030 Hb_001425_060--Hb_000103_030 Hb_003060_040 Hb_003060_040 Hb_001425_060--Hb_003060_040 Hb_012586_020 Hb_012586_020 Hb_002290_050--Hb_012586_020 Hb_001186_070 Hb_001186_070 Hb_002290_050--Hb_001186_070 Hb_113635_010 Hb_113635_010 Hb_002290_050--Hb_113635_010 Hb_039946_010 Hb_039946_010 Hb_002290_050--Hb_039946_010 Hb_002290_050--Hb_004942_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0192299 0.0453942 0.0287974 0 0

CAGE analysis