Hb_001186_070

Information

Type -
Description -
Location Contig1186: 61790-62251
Sequence    

Annotation

kegg
ID sbi:SORBI_06g018200
description SORBIDRAFT_06g018200, Sb06g018200; hypothetical protein
nr
ID XP_012439932.1
description PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
swissprot
ID Q9ZPE4
description F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1
trembl
ID A0A0B0NPB9
description F-box FBW2-like protein OS=Gossypium arboreum GN=F383_05091 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001186_070 0.0 - - PREDICTED: F-box protein FBW2-like [Gossypium raimondii]
2 Hb_002290_050 0.142215708 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001922_080 0.1554124689 - - Tellurite resistance protein tehA, putative [Ricinus communis]
4 Hb_113635_010 0.1570495708 - - -
5 Hb_001433_100 0.1593314761 - - PREDICTED: F-box/LRR-repeat protein 3 isoform X1 [Jatropha curcas]
6 Hb_000329_660 0.1739377413 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
7 Hb_001842_080 0.1758555057 - - -
8 Hb_003226_240 0.1853014851 - - PREDICTED: caffeoylshikimate esterase [Jatropha curcas]
9 Hb_002478_020 0.1858955966 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
10 Hb_001143_070 0.1903638525 - - Acyl-CoA N-acyltransferases (NAT) superfamily protein isoform 1 [Theobroma cacao]
11 Hb_003376_210 0.1911151609 - - -
12 Hb_058143_010 0.197258397 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
13 Hb_004942_020 0.1991018827 - - Potassium transporter, putative [Ricinus communis]
14 Hb_034482_040 0.1994036859 - - aspartate kinase, partial [Francisella tularensis]
15 Hb_023051_020 0.1996373907 - - -
16 Hb_000270_730 0.2035857 - - PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Jatropha curcas]
17 Hb_032202_250 0.2044623673 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
18 Hb_000300_210 0.2058715197 - - gd2b, putative [Ricinus communis]
19 Hb_002989_040 0.2062912673 - - hypothetical protein 1 [Hevea brasiliensis]
20 Hb_000316_100 0.2065908125 - - protein with unknown function [Ricinus communis]

Gene co-expression network

sample Hb_001186_070 Hb_001186_070 Hb_002290_050 Hb_002290_050 Hb_001186_070--Hb_002290_050 Hb_001922_080 Hb_001922_080 Hb_001186_070--Hb_001922_080 Hb_113635_010 Hb_113635_010 Hb_001186_070--Hb_113635_010 Hb_001433_100 Hb_001433_100 Hb_001186_070--Hb_001433_100 Hb_000329_660 Hb_000329_660 Hb_001186_070--Hb_000329_660 Hb_001842_080 Hb_001842_080 Hb_001186_070--Hb_001842_080 Hb_012586_020 Hb_012586_020 Hb_002290_050--Hb_012586_020 Hb_001143_070 Hb_001143_070 Hb_002290_050--Hb_001143_070 Hb_002290_050--Hb_113635_010 Hb_039946_010 Hb_039946_010 Hb_002290_050--Hb_039946_010 Hb_004942_020 Hb_004942_020 Hb_002290_050--Hb_004942_020 Hb_001922_080--Hb_001842_080 Hb_000398_030 Hb_000398_030 Hb_001922_080--Hb_000398_030 Hb_010172_100 Hb_010172_100 Hb_001922_080--Hb_010172_100 Hb_000270_730 Hb_000270_730 Hb_001922_080--Hb_000270_730 Hb_000316_100 Hb_000316_100 Hb_001922_080--Hb_000316_100 Hb_000544_110 Hb_000544_110 Hb_001922_080--Hb_000544_110 Hb_023051_020 Hb_023051_020 Hb_113635_010--Hb_023051_020 Hb_001373_100 Hb_001373_100 Hb_113635_010--Hb_001373_100 Hb_113635_010--Hb_000329_660 Hb_002326_170 Hb_002326_170 Hb_113635_010--Hb_002326_170 Hb_003226_240 Hb_003226_240 Hb_001433_100--Hb_003226_240 Hb_034482_040 Hb_034482_040 Hb_001433_100--Hb_034482_040 Hb_000300_210 Hb_000300_210 Hb_001433_100--Hb_000300_210 Hb_032202_250 Hb_032202_250 Hb_001433_100--Hb_032202_250 Hb_008066_030 Hb_008066_030 Hb_001433_100--Hb_008066_030 Hb_001433_100--Hb_000329_660 Hb_003211_050 Hb_003211_050 Hb_000329_660--Hb_003211_050 Hb_000329_660--Hb_001373_100 Hb_000387_060 Hb_000387_060 Hb_000329_660--Hb_000387_060 Hb_000329_660--Hb_000300_210 Hb_000329_660--Hb_003226_240 Hb_001276_060 Hb_001276_060 Hb_000329_660--Hb_001276_060 Hb_001842_080--Hb_000270_730 Hb_001842_080--Hb_032202_250 Hb_001842_080--Hb_000316_100 Hb_183612_080 Hb_183612_080 Hb_001842_080--Hb_183612_080 Hb_001842_080--Hb_010172_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.195633 0.0563083 0 0.0941646 0.0613916 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.07323 2.76996 0.801956 0 0

CAGE analysis