Hb_001916_030

Information

Type -
Description -
Location Contig1916: 48155-48580
Sequence    

Annotation

kegg
ID pmum:103329252
description uncharacterized LOC103329252
nr
ID XP_012490353.1
description PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2QU31
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G221600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001916_030 0.0 - - PREDICTED: uncharacterized protein LOC105802975 [Gossypium raimondii]
2 Hb_004346_010 0.1564713498 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001675_040 0.1598426497 - - conserved hypothetical protein [Ricinus communis]
4 Hb_007134_030 0.1671810889 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
5 Hb_000645_250 0.1678933575 - - PREDICTED: putative beta-D-xylosidase [Jatropha curcas]
6 Hb_060152_010 0.1708976718 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180 [Jatropha curcas]
7 Hb_000373_060 0.1712892849 - - PREDICTED: extensin-3 [Camelina sativa]
8 Hb_168319_060 0.1713262604 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
9 Hb_003861_090 0.1718599242 - - adenylsulfate kinase, putative [Ricinus communis]
10 Hb_117639_010 0.1763026649 - - hypothetical protein B456_013G070100 [Gossypium raimondii]
11 Hb_000751_060 0.1783434468 - - PREDICTED: extensin-2-like, partial [Sesamum indicum]
12 Hb_000254_060 0.1783795289 - - conserved hypothetical protein [Ricinus communis]
13 Hb_116190_010 0.1810873259 - - PREDICTED: uncharacterized protein LOC105118535 [Populus euphratica]
14 Hb_029510_090 0.1811110271 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
15 Hb_006775_110 0.1868474351 - - PREDICTED: uncharacterized protein LOC105649734 [Jatropha curcas]
16 Hb_000000_200 0.1875373689 - - PREDICTED: protein TRANSPARENT TESTA 12 [Jatropha curcas]
17 Hb_008143_040 0.1893131746 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
18 Hb_007875_020 0.1907880376 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
19 Hb_010334_050 0.1910494804 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006499_020 0.1915001481 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]

Gene co-expression network

sample Hb_001916_030 Hb_001916_030 Hb_004346_010 Hb_004346_010 Hb_001916_030--Hb_004346_010 Hb_001675_040 Hb_001675_040 Hb_001916_030--Hb_001675_040 Hb_007134_030 Hb_007134_030 Hb_001916_030--Hb_007134_030 Hb_000645_250 Hb_000645_250 Hb_001916_030--Hb_000645_250 Hb_060152_010 Hb_060152_010 Hb_001916_030--Hb_060152_010 Hb_000373_060 Hb_000373_060 Hb_001916_030--Hb_000373_060 Hb_000186_290 Hb_000186_290 Hb_004346_010--Hb_000186_290 Hb_004545_070 Hb_004545_070 Hb_004346_010--Hb_004545_070 Hb_007885_020 Hb_007885_020 Hb_004346_010--Hb_007885_020 Hb_009545_030 Hb_009545_030 Hb_004346_010--Hb_009545_030 Hb_078081_010 Hb_078081_010 Hb_004346_010--Hb_078081_010 Hb_004162_140 Hb_004162_140 Hb_001675_040--Hb_004162_140 Hb_003858_080 Hb_003858_080 Hb_001675_040--Hb_003858_080 Hb_002783_180 Hb_002783_180 Hb_001675_040--Hb_002783_180 Hb_006499_020 Hb_006499_020 Hb_001675_040--Hb_006499_020 Hb_168561_010 Hb_168561_010 Hb_001675_040--Hb_168561_010 Hb_003861_090 Hb_003861_090 Hb_001675_040--Hb_003861_090 Hb_007416_290 Hb_007416_290 Hb_007134_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_007134_030--Hb_008143_040 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_007134_030--Hb_009545_030 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010 Hb_000751_060 Hb_000751_060 Hb_000645_250--Hb_000751_060 Hb_000847_120 Hb_000847_120 Hb_000645_250--Hb_000847_120 Hb_008376_020 Hb_008376_020 Hb_000645_250--Hb_008376_020 Hb_000645_250--Hb_060152_010 Hb_000751_070 Hb_000751_070 Hb_000645_250--Hb_000751_070 Hb_000609_020 Hb_000609_020 Hb_000645_250--Hb_000609_020 Hb_060152_010--Hb_000751_060 Hb_168319_060 Hb_168319_060 Hb_060152_010--Hb_168319_060 Hb_060152_010--Hb_000751_070 Hb_001622_020 Hb_001622_020 Hb_060152_010--Hb_001622_020 Hb_000226_110 Hb_000226_110 Hb_060152_010--Hb_000226_110 Hb_000373_060--Hb_003861_090 Hb_116190_010 Hb_116190_010 Hb_000373_060--Hb_116190_010 Hb_010334_050 Hb_010334_050 Hb_000373_060--Hb_010334_050 Hb_000373_060--Hb_006499_020 Hb_000373_060--Hb_000226_110 Hb_000373_060--Hb_000645_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.13055 1.16331 2.98281 0 0.187886
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.177095 0.1391 0 3.53719 2.74392

CAGE analysis