Hb_062558_010

Information

Type -
Description -
Location Contig62558: 595-1488
Sequence    

Annotation

kegg
ID cit:102609019
description l-2-hydroxyglutarate dehydrogenase, mitochondrial-like
nr
ID XP_011040671.1
description PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
swissprot
ID -
description -
trembl
ID A0A067F2C1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g023079mg PE=4 SV=1
Gene Ontology
ID GO:0016491
description l-2-hydroxyglutarate mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51664: 647-1488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_062558_010 0.0 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
2 Hb_103688_010 0.1102777251 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
3 Hb_002740_040 0.128060557 - - hypothetical protein POPTR_0005s00350g [Populus trichocarpa]
4 Hb_000470_110 0.1317391746 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
5 Hb_002025_270 0.1383727501 - - PREDICTED: uncharacterized protein At4g15970 isoform X1 [Jatropha curcas]
6 Hb_000849_080 0.1421834038 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
7 Hb_024758_020 0.1435048952 - - acyl-CoA binding protein 3B [Vernicia fordii]
8 Hb_002808_020 0.1450365766 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
9 Hb_001159_030 0.1451644309 - - PREDICTED: probable protein S-acyltransferase 14 [Jatropha curcas]
10 Hb_002370_030 0.145353233 - - PREDICTED: uncharacterized protein LOC105636715 [Jatropha curcas]
11 Hb_002007_260 0.146481331 - - beta-mannosidase, putative [Ricinus communis]
12 Hb_000318_040 0.1466646677 - - hypothetical protein JCGZ_04877 [Jatropha curcas]
13 Hb_000661_220 0.1469458918 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
14 Hb_000205_280 0.147468287 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
15 Hb_015026_100 0.15061835 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
16 Hb_001558_040 0.1506479996 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
17 Hb_000401_010 0.1514548938 - - SAB, putative [Ricinus communis]
18 Hb_001375_040 0.1520341481 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
19 Hb_005298_020 0.1521242657 - - PREDICTED: anaphase-promoting complex subunit 2 [Jatropha curcas]
20 Hb_005062_110 0.1522142451 - - PREDICTED: transmembrane 9 superfamily member 1 [Jatropha curcas]

Gene co-expression network

sample Hb_062558_010 Hb_062558_010 Hb_103688_010 Hb_103688_010 Hb_062558_010--Hb_103688_010 Hb_002740_040 Hb_002740_040 Hb_062558_010--Hb_002740_040 Hb_000470_110 Hb_000470_110 Hb_062558_010--Hb_000470_110 Hb_002025_270 Hb_002025_270 Hb_062558_010--Hb_002025_270 Hb_000849_080 Hb_000849_080 Hb_062558_010--Hb_000849_080 Hb_024758_020 Hb_024758_020 Hb_062558_010--Hb_024758_020 Hb_103688_010--Hb_000849_080 Hb_002808_020 Hb_002808_020 Hb_103688_010--Hb_002808_020 Hb_135959_010 Hb_135959_010 Hb_103688_010--Hb_135959_010 Hb_002007_260 Hb_002007_260 Hb_103688_010--Hb_002007_260 Hb_001558_040 Hb_001558_040 Hb_103688_010--Hb_001558_040 Hb_000157_070 Hb_000157_070 Hb_103688_010--Hb_000157_070 Hb_002685_030 Hb_002685_030 Hb_002740_040--Hb_002685_030 Hb_087587_010 Hb_087587_010 Hb_002740_040--Hb_087587_010 Hb_014720_030 Hb_014720_030 Hb_002740_040--Hb_014720_030 Hb_002740_040--Hb_000470_110 Hb_000950_040 Hb_000950_040 Hb_002740_040--Hb_000950_040 Hb_114943_020 Hb_114943_020 Hb_002740_040--Hb_114943_020 Hb_002809_160 Hb_002809_160 Hb_000470_110--Hb_002809_160 Hb_004718_060 Hb_004718_060 Hb_000470_110--Hb_004718_060 Hb_001878_060 Hb_001878_060 Hb_000470_110--Hb_001878_060 Hb_011457_140 Hb_011457_140 Hb_000470_110--Hb_011457_140 Hb_000631_090 Hb_000631_090 Hb_000470_110--Hb_000631_090 Hb_054865_020 Hb_054865_020 Hb_000470_110--Hb_054865_020 Hb_005298_020 Hb_005298_020 Hb_002025_270--Hb_005298_020 Hb_001646_010 Hb_001646_010 Hb_002025_270--Hb_001646_010 Hb_005772_030 Hb_005772_030 Hb_002025_270--Hb_005772_030 Hb_002025_270--Hb_024758_020 Hb_002025_270--Hb_002809_160 Hb_003050_150 Hb_003050_150 Hb_002025_270--Hb_003050_150 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_000849_080--Hb_002007_260 Hb_000849_080--Hb_002808_020 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_002849_050 Hb_002849_050 Hb_024758_020--Hb_002849_050 Hb_158845_060 Hb_158845_060 Hb_024758_020--Hb_158845_060 Hb_024758_020--Hb_005298_020 Hb_000297_030 Hb_000297_030 Hb_024758_020--Hb_000297_030 Hb_032823_020 Hb_032823_020 Hb_024758_020--Hb_032823_020 Hb_003964_110 Hb_003964_110 Hb_024758_020--Hb_003964_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.0449 27.6312 34.1751 43.9815 13.1738 34.8754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.41652 2.12803 4.18022 38.3481 22.5518

CAGE analysis