Hb_000392_330

Information

Type -
Description -
Location Contig392: 287400-289896
Sequence    

Annotation

kegg
ID cit:102626011
description protein kinase 2B, chloroplastic-like
nr
ID XP_012080546.1
description PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
swissprot
ID O49840
description Protein kinase 2B, chloroplastic OS=Arabidopsis thaliana GN=APK2B PE=2 SV=1
trembl
ID D7TNC2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g01880 PE=3 SV=1
Gene Ontology
ID GO:0004672
description protein kinase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000392_330 0.0 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
2 Hb_008516_020 0.1424934808 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
3 Hb_004333_020 0.1810961259 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
4 Hb_003086_130 0.1841334915 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
5 Hb_000375_340 0.1989018829 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
6 Hb_004048_060 0.2027512028 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
7 Hb_091433_040 0.2176161911 - - PREDICTED: josephin-like protein [Jatropha curcas]
8 Hb_005914_070 0.2250753073 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002983_030 0.2449415395 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
10 Hb_001894_170 0.2484206244 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
11 Hb_002067_140 0.2568877899 - - -
12 Hb_001268_400 0.2651140566 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
13 Hb_113906_010 0.2651271516 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
14 Hb_000771_130 0.2666216241 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
15 Hb_000193_240 0.2695448948 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
16 Hb_001369_450 0.2703707874 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_000784_040 0.2704616771 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
18 Hb_000450_020 0.2705753247 - - conserved hypothetical protein [Ricinus communis]
19 Hb_168501_010 0.2709000519 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_003913_080 0.2723754503 - - rpl27A [Hemiselmis andersenii]

Gene co-expression network

sample Hb_000392_330 Hb_000392_330 Hb_008516_020 Hb_008516_020 Hb_000392_330--Hb_008516_020 Hb_004333_020 Hb_004333_020 Hb_000392_330--Hb_004333_020 Hb_003086_130 Hb_003086_130 Hb_000392_330--Hb_003086_130 Hb_000375_340 Hb_000375_340 Hb_000392_330--Hb_000375_340 Hb_004048_060 Hb_004048_060 Hb_000392_330--Hb_004048_060 Hb_091433_040 Hb_091433_040 Hb_000392_330--Hb_091433_040 Hb_008516_020--Hb_003086_130 Hb_008516_020--Hb_004048_060 Hb_008516_020--Hb_091433_040 Hb_001534_170 Hb_001534_170 Hb_008516_020--Hb_001534_170 Hb_000951_040 Hb_000951_040 Hb_008516_020--Hb_000951_040 Hb_005914_070 Hb_005914_070 Hb_004333_020--Hb_005914_070 Hb_004333_020--Hb_003086_130 Hb_001369_450 Hb_001369_450 Hb_004333_020--Hb_001369_450 Hb_009314_010 Hb_009314_010 Hb_004333_020--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_004333_020--Hb_000771_130 Hb_000995_070 Hb_000995_070 Hb_003086_130--Hb_000995_070 Hb_003086_130--Hb_005914_070 Hb_003086_130--Hb_091433_040 Hb_000352_180 Hb_000352_180 Hb_000375_340--Hb_000352_180 Hb_000375_340--Hb_091433_040 Hb_000375_340--Hb_003086_130 Hb_002983_030 Hb_002983_030 Hb_000375_340--Hb_002983_030 Hb_010589_050 Hb_010589_050 Hb_000375_340--Hb_010589_050 Hb_014497_110 Hb_014497_110 Hb_004048_060--Hb_014497_110 Hb_004048_060--Hb_002983_030 Hb_000723_160 Hb_000723_160 Hb_004048_060--Hb_000723_160 Hb_001005_070 Hb_001005_070 Hb_004048_060--Hb_001005_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0227581 0.0151628 0 0 0 0.0577542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0416929 0.22957 0.304683 0.052573 0

CAGE analysis