Hb_000375_340

Information

Type -
Description -
Location Contig375: 313055-314788
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28890g
description POPTRDRAFT_641532; hypothetical protein
nr
ID XP_011008419.1
description PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9GH66
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s28890g PE=4 SV=1
Gene Ontology
ID GO:0016740
description udp-glycosyltransferase 87a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000375_340 0.0 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
2 Hb_000392_330 0.1989018829 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
3 Hb_000352_180 0.2163794217 - - conserved hypothetical protein [Ricinus communis]
4 Hb_091433_040 0.2319484065 - - PREDICTED: josephin-like protein [Jatropha curcas]
5 Hb_003086_130 0.235075253 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
6 Hb_002983_030 0.2371250232 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
7 Hb_010589_050 0.2399128136 - - -
8 Hb_001894_170 0.2419987442 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
9 Hb_005224_030 0.2457879372 - - Dipeptide transport ATP-binding protein dppF [Theobroma cacao]
10 Hb_002067_140 0.2482483204 - - -
11 Hb_004333_020 0.2484593136 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
12 Hb_008516_020 0.2507788741 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
13 Hb_002588_040 0.2549717394 - - Pathogenesis-related protein 1 [Theobroma cacao]
14 Hb_113906_010 0.2584618588 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
15 Hb_005914_070 0.2600839731 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003398_140 0.2620144493 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_001348_230 0.2656247572 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_000450_020 0.2669251257 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001396_090 0.2680316408 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 75 [Jatropha curcas]
20 Hb_039946_010 0.2705624014 - - hypothetical protein POPTR_0018s09200g [Populus trichocarpa]

Gene co-expression network

sample Hb_000375_340 Hb_000375_340 Hb_000392_330 Hb_000392_330 Hb_000375_340--Hb_000392_330 Hb_000352_180 Hb_000352_180 Hb_000375_340--Hb_000352_180 Hb_091433_040 Hb_091433_040 Hb_000375_340--Hb_091433_040 Hb_003086_130 Hb_003086_130 Hb_000375_340--Hb_003086_130 Hb_002983_030 Hb_002983_030 Hb_000375_340--Hb_002983_030 Hb_010589_050 Hb_010589_050 Hb_000375_340--Hb_010589_050 Hb_008516_020 Hb_008516_020 Hb_000392_330--Hb_008516_020 Hb_004333_020 Hb_004333_020 Hb_000392_330--Hb_004333_020 Hb_000392_330--Hb_003086_130 Hb_004048_060 Hb_004048_060 Hb_000392_330--Hb_004048_060 Hb_000392_330--Hb_091433_040 Hb_000352_180--Hb_010589_050 Hb_058143_010 Hb_058143_010 Hb_000352_180--Hb_058143_010 Hb_004942_020 Hb_004942_020 Hb_000352_180--Hb_004942_020 Hb_012586_020 Hb_012586_020 Hb_000352_180--Hb_012586_020 Hb_039946_010 Hb_039946_010 Hb_000352_180--Hb_039946_010 Hb_113906_010 Hb_113906_010 Hb_000352_180--Hb_113906_010 Hb_005914_070 Hb_005914_070 Hb_091433_040--Hb_005914_070 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_003086_130--Hb_008516_020 Hb_003086_130--Hb_004333_020 Hb_000995_070 Hb_000995_070 Hb_003086_130--Hb_000995_070 Hb_003086_130--Hb_005914_070 Hb_003086_130--Hb_091433_040 Hb_004453_140 Hb_004453_140 Hb_002983_030--Hb_004453_140 Hb_000193_240 Hb_000193_240 Hb_002983_030--Hb_000193_240 Hb_003060_030 Hb_003060_030 Hb_002983_030--Hb_003060_030 Hb_096225_020 Hb_096225_020 Hb_002983_030--Hb_096225_020 Hb_014497_110 Hb_014497_110 Hb_002983_030--Hb_014497_110 Hb_001143_090 Hb_001143_090 Hb_002983_030--Hb_001143_090 Hb_010589_050--Hb_012586_020 Hb_010589_050--Hb_039946_010 Hb_010589_050--Hb_058143_010 Hb_010589_050--Hb_004942_020 Hb_000352_160 Hb_000352_160 Hb_010589_050--Hb_000352_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0796333 0 0 0 0.0213163 0.0506279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0521038 0.532721 0.451886 0.164884 0

CAGE analysis