Hb_008516_020

Information

Type -
Description -
Location Contig8516: 11338-12135
Sequence    

Annotation

kegg
ID rcu:RCOM_0610240
description hypothetical protein
nr
ID XP_012089483.1
description PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
swissprot
ID Q9XIP5
description Putative B3 domain-containing protein At2g27410 OS=Arabidopsis thaliana GN=At2g27410 PE=3 SV=2
trembl
ID A0A067JUU4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23573 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008516_020 0.0 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
2 Hb_000392_330 0.1424934808 - - PREDICTED: protein kinase 2B, chloroplastic-like [Jatropha curcas]
3 Hb_003086_130 0.1565953892 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
4 Hb_004048_060 0.216035179 - - hypothetical protein PRUPE_ppa023788mg, partial [Prunus persica]
5 Hb_091433_040 0.2223216157 - - PREDICTED: josephin-like protein [Jatropha curcas]
6 Hb_001534_170 0.2386071739 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
7 Hb_000951_040 0.2409832444 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
8 Hb_018954_010 0.2427542177 - - -
9 Hb_004333_020 0.2429404262 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
10 Hb_004871_050 0.2437333064 - - hypothetical protein F383_22684 [Gossypium arboreum]
11 Hb_005914_070 0.2470635403 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000375_340 0.2507788741 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Populus euphratica]
13 Hb_168501_010 0.2517439659 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
14 Hb_000995_070 0.2521653422 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
15 Hb_000972_010 0.2548257778 - - PREDICTED: kinesin KP1 [Jatropha curcas]
16 Hb_000193_240 0.256728837 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
17 Hb_002983_030 0.2574685803 desease resistance Gene Name: NB-ARC hypothetical protein CISIN_1g046124mg, partial [Citrus sinensis]
18 Hb_000784_040 0.2642231713 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
19 Hb_001268_400 0.2703245095 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
20 Hb_001005_070 0.276141102 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF113-like [Jatropha curcas]

Gene co-expression network

sample Hb_008516_020 Hb_008516_020 Hb_000392_330 Hb_000392_330 Hb_008516_020--Hb_000392_330 Hb_003086_130 Hb_003086_130 Hb_008516_020--Hb_003086_130 Hb_004048_060 Hb_004048_060 Hb_008516_020--Hb_004048_060 Hb_091433_040 Hb_091433_040 Hb_008516_020--Hb_091433_040 Hb_001534_170 Hb_001534_170 Hb_008516_020--Hb_001534_170 Hb_000951_040 Hb_000951_040 Hb_008516_020--Hb_000951_040 Hb_004333_020 Hb_004333_020 Hb_000392_330--Hb_004333_020 Hb_000392_330--Hb_003086_130 Hb_000375_340 Hb_000375_340 Hb_000392_330--Hb_000375_340 Hb_000392_330--Hb_004048_060 Hb_000392_330--Hb_091433_040 Hb_003086_130--Hb_004333_020 Hb_000995_070 Hb_000995_070 Hb_003086_130--Hb_000995_070 Hb_005914_070 Hb_005914_070 Hb_003086_130--Hb_005914_070 Hb_003086_130--Hb_091433_040 Hb_014497_110 Hb_014497_110 Hb_004048_060--Hb_014497_110 Hb_002983_030 Hb_002983_030 Hb_004048_060--Hb_002983_030 Hb_000723_160 Hb_000723_160 Hb_004048_060--Hb_000723_160 Hb_001005_070 Hb_001005_070 Hb_004048_060--Hb_001005_070 Hb_091433_040--Hb_005914_070 Hb_113906_010 Hb_113906_010 Hb_091433_040--Hb_113906_010 Hb_000227_200 Hb_000227_200 Hb_091433_040--Hb_000227_200 Hb_000450_020 Hb_000450_020 Hb_091433_040--Hb_000450_020 Hb_000111_010 Hb_000111_010 Hb_091433_040--Hb_000111_010 Hb_000784_040 Hb_000784_040 Hb_091433_040--Hb_000784_040 Hb_018954_010 Hb_018954_010 Hb_001534_170--Hb_018954_010 Hb_001534_170--Hb_000995_070 Hb_010417_010 Hb_010417_010 Hb_001534_170--Hb_010417_010 Hb_100873_030 Hb_100873_030 Hb_001534_170--Hb_100873_030 Hb_004871_050 Hb_004871_050 Hb_001534_170--Hb_004871_050 Hb_174876_010 Hb_174876_010 Hb_001534_170--Hb_174876_010 Hb_007753_010 Hb_007753_010 Hb_000951_040--Hb_007753_010 Hb_000421_190 Hb_000421_190 Hb_000951_040--Hb_000421_190 Hb_000951_040--Hb_004871_050 Hb_001396_230 Hb_001396_230 Hb_000951_040--Hb_001396_230 Hb_001153_220 Hb_001153_220 Hb_000951_040--Hb_001153_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0294264 0 0 0 0 0.107064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0677109 0.212963 0.385139 0.0431034 0

CAGE analysis