Hb_007913_040

Information

Type -
Description -
Location Contig7913: 51012-54959
Sequence    

Annotation

kegg
ID rcu:RCOM_0658920
description sterol desaturase, putative
nr
ID XP_002526512.1
description sterol desaturase, putative [Ricinus communis]
swissprot
ID F4HVY0
description Protein ECERIFERUM 1 OS=Arabidopsis thaliana GN=CER1 PE=1 SV=1
trembl
ID B9SKI2
description Sterol desaturase, putative OS=Ricinus communis GN=RCOM_0658920 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein eceriferum 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58358: 51163-51965
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007913_040 0.0 - - sterol desaturase, putative [Ricinus communis]
2 Hb_000270_150 0.1857753098 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
3 Hb_000091_100 0.1939296668 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_002245_040 0.2110141982 - - thioredoxin h [Hevea brasiliensis]
5 Hb_080477_060 0.2224781419 - - conserved hypothetical protein [Ricinus communis]
6 Hb_148262_020 0.237431265 - - -
7 Hb_000567_280 0.2402070656 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
8 Hb_002260_020 0.2444248641 - - -
9 Hb_000345_430 0.2504988673 - - 40S ribosomal protein S24A [Hevea brasiliensis]
10 Hb_012799_020 0.2524760723 - - metal ion binding protein, putative [Ricinus communis]
11 Hb_106029_010 0.2529421045 - - Transcription factor ICE1, putative [Ricinus communis]
12 Hb_000067_020 0.2559664421 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
13 Hb_030954_020 0.2575005979 - - hypothetical protein RCOM_1330200 [Ricinus communis]
14 Hb_002233_110 0.262370893 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
15 Hb_001257_020 0.2645465299 - - -
16 Hb_021056_010 0.2649864519 - - unnamed protein product [Vitis vinifera]
17 Hb_004128_040 0.2681228134 - - -
18 Hb_009659_020 0.2695691021 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
19 Hb_000094_260 0.2724887256 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001379_130 0.2736594403 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_007913_040 Hb_007913_040 Hb_000270_150 Hb_000270_150 Hb_007913_040--Hb_000270_150 Hb_000091_100 Hb_000091_100 Hb_007913_040--Hb_000091_100 Hb_002245_040 Hb_002245_040 Hb_007913_040--Hb_002245_040 Hb_080477_060 Hb_080477_060 Hb_007913_040--Hb_080477_060 Hb_148262_020 Hb_148262_020 Hb_007913_040--Hb_148262_020 Hb_000567_280 Hb_000567_280 Hb_007913_040--Hb_000567_280 Hb_000270_150--Hb_148262_020 Hb_000067_020 Hb_000067_020 Hb_000270_150--Hb_000067_020 Hb_000270_150--Hb_002245_040 Hb_001257_020 Hb_001257_020 Hb_000270_150--Hb_001257_020 Hb_000736_010 Hb_000736_010 Hb_000270_150--Hb_000736_010 Hb_000091_100--Hb_080477_060 Hb_002260_020 Hb_002260_020 Hb_000091_100--Hb_002260_020 Hb_030954_020 Hb_030954_020 Hb_000091_100--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_000091_100--Hb_000567_280 Hb_028285_030 Hb_028285_030 Hb_002245_040--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002245_040--Hb_128524_010 Hb_000120_360 Hb_000120_360 Hb_002245_040--Hb_000120_360 Hb_135585_010 Hb_135585_010 Hb_002245_040--Hb_135585_010 Hb_080477_060--Hb_030954_020 Hb_080477_060--Hb_009659_020 Hb_080477_060--Hb_002260_020 Hb_001623_430 Hb_001623_430 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_148262_020--Hb_001257_020 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_001379_130 Hb_001379_130 Hb_148262_020--Hb_001379_130 Hb_148262_020--Hb_000736_010 Hb_000003_770 Hb_000003_770 Hb_148262_020--Hb_000003_770 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.271709 0.0114263 0.0175563 1.61344 0.247711 1.70735
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9213 6.69127 0.738941 0.25427 0

CAGE analysis