Hb_000617_290

Information

Type -
Description -
Location Contig617: 205665-206618
Sequence    

Annotation

kegg
ID rcu:RCOM_1001680
description hypothetical protein
nr
ID XP_002519269.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P22242
description Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1
trembl
ID B9RZV0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1001680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000617_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_154443_010 0.1456338998 - - PREDICTED: uncharacterized protein LOC105633410 [Jatropha curcas]
3 Hb_008864_060 0.1778738194 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
4 Hb_005616_030 0.1905649961 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
5 Hb_002099_050 0.193193579 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000614_100 0.1994139726 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
7 Hb_048937_030 0.2032980383 - - hypothetical protein RCOM_0231790 [Ricinus communis]
8 Hb_000250_010 0.2081511622 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_002326_170 0.2126798781 - - Protein Z, putative [Ricinus communis]
10 Hb_001741_040 0.224385706 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
11 Hb_006018_030 0.2245711555 - - PREDICTED: uncharacterized protein LOC105108875 isoform X1 [Populus euphratica]
12 Hb_003913_140 0.2255337424 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
13 Hb_002045_200 0.2263836487 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
14 Hb_001638_210 0.2290271424 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011671_400 0.2374844877 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
16 Hb_052941_010 0.2437867228 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
17 Hb_027346_020 0.2443945765 - - -
18 Hb_005568_010 0.2448511438 - - -
19 Hb_001276_060 0.248403932 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
20 Hb_001671_060 0.2492436965 - - fad NAD binding oxidoreductases, putative [Ricinus communis]

Gene co-expression network

sample Hb_000617_290 Hb_000617_290 Hb_154443_010 Hb_154443_010 Hb_000617_290--Hb_154443_010 Hb_008864_060 Hb_008864_060 Hb_000617_290--Hb_008864_060 Hb_005616_030 Hb_005616_030 Hb_000617_290--Hb_005616_030 Hb_002099_050 Hb_002099_050 Hb_000617_290--Hb_002099_050 Hb_000614_100 Hb_000614_100 Hb_000617_290--Hb_000614_100 Hb_048937_030 Hb_048937_030 Hb_000617_290--Hb_048937_030 Hb_001638_210 Hb_001638_210 Hb_154443_010--Hb_001638_210 Hb_006018_030 Hb_006018_030 Hb_154443_010--Hb_006018_030 Hb_154443_010--Hb_048937_030 Hb_154443_010--Hb_002099_050 Hb_020096_020 Hb_020096_020 Hb_154443_010--Hb_020096_020 Hb_000250_010 Hb_000250_010 Hb_008864_060--Hb_000250_010 Hb_001959_260 Hb_001959_260 Hb_008864_060--Hb_001959_260 Hb_011671_400 Hb_011671_400 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_002780_050 Hb_002780_050 Hb_005616_030--Hb_002780_050 Hb_005616_030--Hb_008864_060 Hb_001780_070 Hb_001780_070 Hb_005616_030--Hb_001780_070 Hb_005616_030--Hb_001959_260 Hb_000720_190 Hb_000720_190 Hb_005616_030--Hb_000720_190 Hb_002099_050--Hb_011671_400 Hb_002099_050--Hb_000250_010 Hb_001892_120 Hb_001892_120 Hb_002099_050--Hb_001892_120 Hb_002260_090 Hb_002260_090 Hb_002099_050--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_002099_050--Hb_003052_040 Hb_001157_220 Hb_001157_220 Hb_000614_100--Hb_001157_220 Hb_000614_100--Hb_001780_070 Hb_003286_020 Hb_003286_020 Hb_000614_100--Hb_003286_020 Hb_098315_030 Hb_098315_030 Hb_000614_100--Hb_098315_030 Hb_000614_100--Hb_002099_050 Hb_048937_030--Hb_006018_030 Hb_000742_270 Hb_000742_270 Hb_048937_030--Hb_000742_270 Hb_048937_030--Hb_011671_400 Hb_000107_070 Hb_000107_070 Hb_048937_030--Hb_000107_070 Hb_003020_310 Hb_003020_310 Hb_048937_030--Hb_003020_310 Hb_000175_610 Hb_000175_610 Hb_048937_030--Hb_000175_610
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0670688 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.232101 0.121649 0.217843 0 0

CAGE analysis