Hb_098315_030

Information

Type -
Description -
Location Contig98315: 8628-13011
Sequence    

Annotation

kegg
ID sot:102585501
description putative glutamine amidotransferase YLR126C-like
nr
ID XP_012081389.1
description PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
swissprot
ID Q12288
description Putative glutamine amidotransferase YLR126C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1 SV=1
trembl
ID A0A067K4L7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18770 PE=4 SV=1
Gene Ontology
ID GO:0016740
description glutamine amidotransferase ylr126c

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64494: 9368-12899
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_098315_030 0.0 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
2 Hb_000563_560 0.1663130492 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
3 Hb_081245_010 0.1889342109 - - Caffeic acid 3-O-methyltransferase [Morus notabilis]
4 Hb_001780_070 0.1991083366 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
5 Hb_001349_010 0.2028603887 - - -
6 Hb_001157_220 0.2127004845 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000614_100 0.2134326124 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]
8 Hb_000300_400 0.2144581948 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
9 Hb_002000_110 0.2167772307 - - ASR-like protein 2 [Hevea brasiliensis]
10 Hb_002235_230 0.2221820727 - - latex abundant protein 1 [Hevea brasiliensis]
11 Hb_042729_010 0.2232482092 - - -
12 Hb_000260_580 0.2235672529 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000419_040 0.2273089912 - - chorismate synthase [Hevea brasiliensis]
14 Hb_080477_050 0.227538986 - - hypothetical protein M569_16374 [Genlisea aurea]
15 Hb_000157_040 0.2291823673 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
16 Hb_000545_170 0.2298914951 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
17 Hb_001741_090 0.2303594589 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
18 Hb_000175_610 0.2308539604 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
19 Hb_000345_030 0.2312012727 - - REF-like stress related protein 1 [Hevea brasiliensis]
20 Hb_001671_060 0.2319967903 - - fad NAD binding oxidoreductases, putative [Ricinus communis]

Gene co-expression network

sample Hb_098315_030 Hb_098315_030 Hb_000563_560 Hb_000563_560 Hb_098315_030--Hb_000563_560 Hb_081245_010 Hb_081245_010 Hb_098315_030--Hb_081245_010 Hb_001780_070 Hb_001780_070 Hb_098315_030--Hb_001780_070 Hb_001349_010 Hb_001349_010 Hb_098315_030--Hb_001349_010 Hb_001157_220 Hb_001157_220 Hb_098315_030--Hb_001157_220 Hb_000614_100 Hb_000614_100 Hb_098315_030--Hb_000614_100 Hb_000032_040 Hb_000032_040 Hb_000563_560--Hb_000032_040 Hb_000742_270 Hb_000742_270 Hb_000563_560--Hb_000742_270 Hb_000310_030 Hb_000310_030 Hb_000563_560--Hb_000310_030 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_148121_010 Hb_148121_010 Hb_000563_560--Hb_148121_010 Hb_004128_210 Hb_004128_210 Hb_081245_010--Hb_004128_210 Hb_001198_030 Hb_001198_030 Hb_081245_010--Hb_001198_030 Hb_001266_050 Hb_001266_050 Hb_081245_010--Hb_001266_050 Hb_081245_010--Hb_001349_010 Hb_000300_400 Hb_000300_400 Hb_081245_010--Hb_000300_400 Hb_000733_030 Hb_000733_030 Hb_081245_010--Hb_000733_030 Hb_000175_610 Hb_000175_610 Hb_001780_070--Hb_000175_610 Hb_003286_020 Hb_003286_020 Hb_001780_070--Hb_003286_020 Hb_005616_030 Hb_005616_030 Hb_001780_070--Hb_005616_030 Hb_001741_090 Hb_001741_090 Hb_001780_070--Hb_001741_090 Hb_075449_050 Hb_075449_050 Hb_001780_070--Hb_075449_050 Hb_000107_070 Hb_000107_070 Hb_001780_070--Hb_000107_070 Hb_000934_030 Hb_000934_030 Hb_001349_010--Hb_000934_030 Hb_001349_010--Hb_001198_030 Hb_001349_010--Hb_000733_030 Hb_042729_010 Hb_042729_010 Hb_001349_010--Hb_042729_010 Hb_025087_010 Hb_025087_010 Hb_001349_010--Hb_025087_010 Hb_001722_040 Hb_001722_040 Hb_001349_010--Hb_001722_040 Hb_001671_060 Hb_001671_060 Hb_001157_220--Hb_001671_060 Hb_000803_050 Hb_000803_050 Hb_001157_220--Hb_000803_050 Hb_008864_060 Hb_008864_060 Hb_001157_220--Hb_008864_060 Hb_001157_220--Hb_000614_100 Hb_001157_220--Hb_001780_070 Hb_002099_050 Hb_002099_050 Hb_001157_220--Hb_002099_050 Hb_000617_290 Hb_000617_290 Hb_000614_100--Hb_000617_290 Hb_000614_100--Hb_001780_070 Hb_000614_100--Hb_003286_020 Hb_000614_100--Hb_002099_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
63.7098 2.23504 3.51653 7.82714 127.107 10.9589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
395.357 122.256 230.427 27.0448 3.70371

CAGE analysis