Hb_009288_030

Information

Type -
Description -
Location Contig9288: 17120-19855
Sequence    

Annotation

kegg
ID rcu:RCOM_1502900
description cell division cycle, putative
nr
ID XP_012090536.1
description PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
swissprot
ID Q9SZA4
description Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana GN=CDC20-1 PE=1 SV=1
trembl
ID B9RA26
description Cell division cycle, putative OS=Ricinus communis GN=RCOM_1502900 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cell division cycle cofactor of apc complex-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62790: 11163-16369 , PASA_asmbl_62791: 18683-19142
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009288_030 0.0 - - PREDICTED: cell division cycle 20.2, cofactor of APC complex-like [Jatropha curcas]
2 Hb_004297_090 0.1637631995 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
3 Hb_001677_100 0.1717858934 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
4 Hb_000678_010 0.1731558032 - - PREDICTED: ketol-acid reductoisomerase, chloroplastic-like [Jatropha curcas]
5 Hb_000661_220 0.1793755798 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 55-like [Jatropha curcas]
6 Hb_005903_020 0.1803652191 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
7 Hb_000000_330 0.1830037268 - - PREDICTED: uncharacterized protein LOC105633747 [Jatropha curcas]
8 Hb_052135_020 0.1834484417 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
9 Hb_000359_200 0.1852876661 - - triacylglycerol lipase, putative [Ricinus communis]
10 Hb_000363_410 0.1906116275 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
11 Hb_006775_120 0.1909762135 - - exonuclease-like protein [Oryza sativa Japonica Group]
12 Hb_028872_160 0.1915185686 - - PREDICTED: ATP-dependent DNA helicase Q-like 5 [Jatropha curcas]
13 Hb_001018_060 0.1919508552 - - hypothetical protein B456_001G028000 [Gossypium raimondii]
14 Hb_003683_130 0.1947657496 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
15 Hb_002317_010 0.1968785175 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
16 Hb_000803_120 0.2006617145 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
17 Hb_011214_110 0.2024173841 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
18 Hb_000260_400 0.2029052906 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
19 Hb_000365_200 0.2029545199 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
20 Hb_129204_020 0.2031650944 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]

Gene co-expression network

sample Hb_009288_030 Hb_009288_030 Hb_004297_090 Hb_004297_090 Hb_009288_030--Hb_004297_090 Hb_001677_100 Hb_001677_100 Hb_009288_030--Hb_001677_100 Hb_000678_010 Hb_000678_010 Hb_009288_030--Hb_000678_010 Hb_000661_220 Hb_000661_220 Hb_009288_030--Hb_000661_220 Hb_005903_020 Hb_005903_020 Hb_009288_030--Hb_005903_020 Hb_000000_330 Hb_000000_330 Hb_009288_030--Hb_000000_330 Hb_004297_090--Hb_001677_100 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_000260_400 Hb_000260_400 Hb_004297_090--Hb_000260_400 Hb_004883_020 Hb_004883_020 Hb_004297_090--Hb_004883_020 Hb_009296_020 Hb_009296_020 Hb_004297_090--Hb_009296_020 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_001677_100--Hb_009296_020 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_002913_010 Hb_002913_010 Hb_000678_010--Hb_002913_010 Hb_000678_010--Hb_005903_020 Hb_000229_050 Hb_000229_050 Hb_000678_010--Hb_000229_050 Hb_000926_060 Hb_000926_060 Hb_000678_010--Hb_000926_060 Hb_011716_010 Hb_011716_010 Hb_000678_010--Hb_011716_010 Hb_000830_020 Hb_000830_020 Hb_000678_010--Hb_000830_020 Hb_024758_020 Hb_024758_020 Hb_000661_220--Hb_024758_020 Hb_000661_220--Hb_001677_100 Hb_000567_090 Hb_000567_090 Hb_000661_220--Hb_000567_090 Hb_000661_220--Hb_000000_330 Hb_000803_120 Hb_000803_120 Hb_000661_220--Hb_000803_120 Hb_000661_220--Hb_002849_050 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_005903_020--Hb_011716_010 Hb_004108_210 Hb_004108_210 Hb_005903_020--Hb_004108_210 Hb_005903_020--Hb_000926_060 Hb_074399_010 Hb_074399_010 Hb_000000_330--Hb_074399_010 Hb_006775_120 Hb_006775_120 Hb_000000_330--Hb_006775_120 Hb_164010_050 Hb_164010_050 Hb_000000_330--Hb_164010_050 Hb_000003_030 Hb_000003_030 Hb_000000_330--Hb_000003_030 Hb_002783_220 Hb_002783_220 Hb_000000_330--Hb_002783_220 Hb_003540_050 Hb_003540_050 Hb_000000_330--Hb_003540_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.019262 0.038487 0.246633 0.131763 0.0310175 0.0474412
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.035292 0 0.051937 0.15539 0.0578093

CAGE analysis