Hb_006483_030

Information

Type -
Description -
Location Contig6483: 40422-42692
Sequence    

Annotation

kegg
ID rcu:RCOM_1409720
description Cucumisin precursor, putative (EC:3.4.21.25)
nr
ID XP_002523606.1
description Cucumisin precursor, putative [Ricinus communis]
swissprot
ID O65351
description Subtilisin-like protease SBT1.7 OS=Arabidopsis thaliana GN=SBT1.7 PE=1 SV=1
trembl
ID B9SC87
description Cucumisin, putative OS=Ricinus communis GN=RCOM_1409720 PE=4 SV=1
Gene Ontology
ID GO:0004252
description subtilisin-like protease

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52441: 41284-41609
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006483_030 0.0 - - Cucumisin precursor, putative [Ricinus communis]
2 Hb_007157_060 0.1455732511 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
3 Hb_005504_020 0.1905387196 - - -
4 Hb_000500_080 0.1917883955 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
5 Hb_065841_010 0.193873052 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
6 Hb_001103_070 0.2134373834 - - Patellin-3, putative [Ricinus communis]
7 Hb_008054_050 0.2141955492 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
8 Hb_145317_010 0.2197780454 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
9 Hb_000062_030 0.2250363642 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720 isoform X2 [Jatropha curcas]
10 Hb_004374_130 0.2290851917 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
11 Hb_005843_160 0.2298681197 - - PREDICTED: uncharacterized protein LOC105112024 [Populus euphratica]
12 Hb_186857_010 0.2310481925 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
13 Hb_002498_050 0.2363787876 - - PREDICTED: aspartic proteinase-like [Jatropha curcas]
14 Hb_001004_120 0.2395887549 - - PREDICTED: receptor-like protein kinase HERK 1 isoform X2 [Jatropha curcas]
15 Hb_007749_010 0.2478327162 - - -
16 Hb_000366_190 0.2487969987 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
17 Hb_000818_100 0.2517603507 - - PREDICTED: delta(24)-sterol reductase [Jatropha curcas]
18 Hb_018118_030 0.2546373034 - - PREDICTED: putative multidrug resistance protein, partial [Musa acuminata subsp. malaccensis]
19 Hb_000258_290 0.2548463009 transcription factor TF Family: TCP PREDICTED: transcription factor TCP15 [Jatropha curcas]
20 Hb_001080_130 0.2548948529 - - catalase [Hevea brasiliensis]

Gene co-expression network

sample Hb_006483_030 Hb_006483_030 Hb_007157_060 Hb_007157_060 Hb_006483_030--Hb_007157_060 Hb_005504_020 Hb_005504_020 Hb_006483_030--Hb_005504_020 Hb_000500_080 Hb_000500_080 Hb_006483_030--Hb_000500_080 Hb_065841_010 Hb_065841_010 Hb_006483_030--Hb_065841_010 Hb_001103_070 Hb_001103_070 Hb_006483_030--Hb_001103_070 Hb_008054_050 Hb_008054_050 Hb_006483_030--Hb_008054_050 Hb_007157_060--Hb_065841_010 Hb_007749_010 Hb_007749_010 Hb_007157_060--Hb_007749_010 Hb_145317_010 Hb_145317_010 Hb_007157_060--Hb_145317_010 Hb_000181_290 Hb_000181_290 Hb_007157_060--Hb_000181_290 Hb_000818_100 Hb_000818_100 Hb_007157_060--Hb_000818_100 Hb_005504_020--Hb_007157_060 Hb_000438_150 Hb_000438_150 Hb_005504_020--Hb_000438_150 Hb_000406_010 Hb_000406_010 Hb_005504_020--Hb_000406_010 Hb_005504_020--Hb_065841_010 Hb_005504_020--Hb_008054_050 Hb_001004_120 Hb_001004_120 Hb_000500_080--Hb_001004_120 Hb_001080_130 Hb_001080_130 Hb_000500_080--Hb_001080_130 Hb_031931_020 Hb_031931_020 Hb_000500_080--Hb_031931_020 Hb_150346_010 Hb_150346_010 Hb_000500_080--Hb_150346_010 Hb_000649_270 Hb_000649_270 Hb_000500_080--Hb_000649_270 Hb_002902_080 Hb_002902_080 Hb_000500_080--Hb_002902_080 Hb_013358_100 Hb_013358_100 Hb_065841_010--Hb_013358_100 Hb_065841_010--Hb_008054_050 Hb_068569_010 Hb_068569_010 Hb_065841_010--Hb_068569_010 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_000732_240 Hb_000732_240 Hb_001103_070--Hb_000732_240 Hb_001103_070--Hb_001004_120 Hb_000099_190 Hb_000099_190 Hb_001103_070--Hb_000099_190 Hb_001103_070--Hb_145317_010 Hb_160405_010 Hb_160405_010 Hb_001103_070--Hb_160405_010 Hb_003082_040 Hb_003082_040 Hb_001103_070--Hb_003082_040 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.69889 2.79732 1.54475 8.52099 5.03756 2.04703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.058858 0.0771888 0.234945 2.22698 0.294652

CAGE analysis