Hb_005504_020

Information

Type -
Description -
Location Contig5504: 12769-13438
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005504_020 0.0 - - -
2 Hb_006483_030 0.1905387196 - - Cucumisin precursor, putative [Ricinus communis]
3 Hb_007157_060 0.2248943467 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
4 Hb_000438_150 0.2267585352 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 7 [Jatropha curcas]
5 Hb_000406_010 0.2538815778 - - PREDICTED: uncharacterized protein LOC105647846 [Jatropha curcas]
6 Hb_065841_010 0.2611073954 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
7 Hb_008054_050 0.2619514449 - - PREDICTED: uncharacterized protein LOC101212042 [Cucumis sativus]
8 Hb_000099_190 0.2649700205 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
9 Hb_001103_070 0.2661003613 - - Patellin-3, putative [Ricinus communis]
10 Hb_179679_010 0.2667260229 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
11 Hb_004374_130 0.2685345656 - - PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Jatropha curcas]
12 Hb_048944_020 0.2695827454 - - hypothetical protein POPTR_0014s002002g, partial [Populus trichocarpa]
13 Hb_006286_010 0.2748452197 - - hypothetical protein PRUPE_ppa017148mg [Prunus persica]
14 Hb_111876_010 0.2800226861 - - Auxin response factor, putative [Ricinus communis]
15 Hb_186857_010 0.280207748 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
16 Hb_188411_010 0.2808621049 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 [Jatropha curcas]
17 Hb_133605_010 0.281635654 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
18 Hb_145317_010 0.2820243852 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
19 Hb_125948_010 0.2846434987 - - heat-shock protein, putative [Ricinus communis]
20 Hb_000732_240 0.2850756383 - - PREDICTED: dynein light chain 1, cytoplasmic-like [Jatropha curcas]

Gene co-expression network

sample Hb_005504_020 Hb_005504_020 Hb_006483_030 Hb_006483_030 Hb_005504_020--Hb_006483_030 Hb_007157_060 Hb_007157_060 Hb_005504_020--Hb_007157_060 Hb_000438_150 Hb_000438_150 Hb_005504_020--Hb_000438_150 Hb_000406_010 Hb_000406_010 Hb_005504_020--Hb_000406_010 Hb_065841_010 Hb_065841_010 Hb_005504_020--Hb_065841_010 Hb_008054_050 Hb_008054_050 Hb_005504_020--Hb_008054_050 Hb_006483_030--Hb_007157_060 Hb_000500_080 Hb_000500_080 Hb_006483_030--Hb_000500_080 Hb_006483_030--Hb_065841_010 Hb_001103_070 Hb_001103_070 Hb_006483_030--Hb_001103_070 Hb_006483_030--Hb_008054_050 Hb_007157_060--Hb_065841_010 Hb_007749_010 Hb_007749_010 Hb_007157_060--Hb_007749_010 Hb_145317_010 Hb_145317_010 Hb_007157_060--Hb_145317_010 Hb_000181_290 Hb_000181_290 Hb_007157_060--Hb_000181_290 Hb_000818_100 Hb_000818_100 Hb_007157_060--Hb_000818_100 Hb_009476_150 Hb_009476_150 Hb_000438_150--Hb_009476_150 Hb_000099_190 Hb_000099_190 Hb_000438_150--Hb_000099_190 Hb_000732_240 Hb_000732_240 Hb_000438_150--Hb_000732_240 Hb_048944_020 Hb_048944_020 Hb_000438_150--Hb_048944_020 Hb_002196_010 Hb_002196_010 Hb_000438_150--Hb_002196_010 Hb_000438_150--Hb_007157_060 Hb_093385_010 Hb_093385_010 Hb_000406_010--Hb_093385_010 Hb_188411_010 Hb_188411_010 Hb_000406_010--Hb_188411_010 Hb_133605_010 Hb_133605_010 Hb_000406_010--Hb_133605_010 Hb_000413_150 Hb_000413_150 Hb_000406_010--Hb_000413_150 Hb_002343_030 Hb_002343_030 Hb_000406_010--Hb_002343_030 Hb_000197_170 Hb_000197_170 Hb_000406_010--Hb_000197_170 Hb_013358_100 Hb_013358_100 Hb_065841_010--Hb_013358_100 Hb_065841_010--Hb_008054_050 Hb_068569_010 Hb_068569_010 Hb_065841_010--Hb_068569_010 Hb_161994_040 Hb_161994_040 Hb_065841_010--Hb_161994_040 Hb_177152_010 Hb_177152_010 Hb_065841_010--Hb_177152_010 Hb_008054_050--Hb_145317_010 Hb_004374_130 Hb_004374_130 Hb_008054_050--Hb_004374_130 Hb_008054_050--Hb_161994_040 Hb_000311_030 Hb_000311_030 Hb_008054_050--Hb_000311_030 Hb_002498_050 Hb_002498_050 Hb_008054_050--Hb_002498_050 Hb_001217_040 Hb_001217_040 Hb_008054_050--Hb_001217_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5601 11.4212 6.60186 27.5989 12.771 2.06295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.13853 0 3.47971 0

CAGE analysis