Hb_018616_030

Information

Type -
Description -
Location Contig18616: 7199-10573
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID KJB51042.1
description hypothetical protein B456_008G198600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018616_030 0.0 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
2 Hb_001140_230 0.1529379091 - - -
3 Hb_001140_340 0.170776856 - - -
4 Hb_000733_110 0.1911036612 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
5 Hb_029475_010 0.2222769178 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003947_010 0.259359067 - - hypothetical protein JCGZ_24829 [Jatropha curcas]
7 Hb_000521_310 0.2808144401 - - -
8 Hb_000329_640 0.2897530916 - - -
9 Hb_178817_010 0.2925623207 - - protease [Gossypium hirsutum]
10 Hb_006711_050 0.3090512424 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
11 Hb_012702_030 0.3144422443 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
12 Hb_003673_030 0.3156629932 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
13 Hb_011113_020 0.3168502237 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
14 Hb_000089_150 0.3195791225 - - PREDICTED: uncharacterized protein LOC105635964 [Jatropha curcas]
15 Hb_002392_060 0.3235625028 - - gag/pol protein [Bryonia dioica]
16 Hb_002928_080 0.32356373 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
17 Hb_100821_010 0.323616638 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
18 Hb_000757_080 0.3240127448 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
19 Hb_181132_010 0.3242028268 - - -
20 Hb_001433_010 0.3246271362 - - -

Gene co-expression network

sample Hb_018616_030 Hb_018616_030 Hb_001140_230 Hb_001140_230 Hb_018616_030--Hb_001140_230 Hb_001140_340 Hb_001140_340 Hb_018616_030--Hb_001140_340 Hb_000733_110 Hb_000733_110 Hb_018616_030--Hb_000733_110 Hb_029475_010 Hb_029475_010 Hb_018616_030--Hb_029475_010 Hb_003947_010 Hb_003947_010 Hb_018616_030--Hb_003947_010 Hb_000521_310 Hb_000521_310 Hb_018616_030--Hb_000521_310 Hb_001140_230--Hb_000733_110 Hb_011113_020 Hb_011113_020 Hb_001140_230--Hb_011113_020 Hb_001140_230--Hb_001140_340 Hb_001140_230--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_001140_230--Hb_178817_010 Hb_001140_340--Hb_029475_010 Hb_000329_640 Hb_000329_640 Hb_001140_340--Hb_000329_640 Hb_006711_050 Hb_006711_050 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_178817_010 Hb_012702_030 Hb_012702_030 Hb_001140_340--Hb_012702_030 Hb_003673_030 Hb_003673_030 Hb_001140_340--Hb_003673_030 Hb_001488_050 Hb_001488_050 Hb_000733_110--Hb_001488_050 Hb_002495_020 Hb_002495_020 Hb_000733_110--Hb_002495_020 Hb_000733_110--Hb_011113_020 Hb_003102_040 Hb_003102_040 Hb_000733_110--Hb_003102_040 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_003673_030 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_003947_010--Hb_000329_640 Hb_003947_010--Hb_001140_340 Hb_003947_010--Hb_012702_030 Hb_003947_010--Hb_029475_010 Hb_002760_030 Hb_002760_030 Hb_003947_010--Hb_002760_030 Hb_003947_010--Hb_006711_050 Hb_005147_050 Hb_005147_050 Hb_000521_310--Hb_005147_050 Hb_000521_310--Hb_001140_340 Hb_009913_010 Hb_009913_010 Hb_000521_310--Hb_009913_010 Hb_000521_310--Hb_029475_010 Hb_022593_030 Hb_022593_030 Hb_000521_310--Hb_022593_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0192145 0.00792759 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0136633 0

CAGE analysis