Hb_001140_230

Information

Type -
Description -
Location Contig1140: 247589-253747
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001140_230 0.0 - - -
2 Hb_000733_110 0.0984546153 - - hypothetical protein JCGZ_01360 [Jatropha curcas]
3 Hb_018616_030 0.1529379091 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
4 Hb_011113_020 0.2030555774 - - hypothetical protein CICLE_v10018209mg [Citrus clementina]
5 Hb_001140_340 0.2096941502 - - -
6 Hb_029475_010 0.2346649222 - - conserved hypothetical protein [Ricinus communis]
7 Hb_178817_010 0.2584542095 - - protease [Gossypium hirsutum]
8 Hb_003673_030 0.2932683323 - - hypothetical protein POPTR_0011s11940g [Populus trichocarpa]
9 Hb_085922_010 0.3123727859 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_000504_250 0.3182709567 - - -
11 Hb_155880_010 0.319232175 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
12 Hb_000521_310 0.3209017843 - - -
13 Hb_006711_050 0.3294326063 - - PREDICTED: putative germin-like protein 2-1 [Jatropha curcas]
14 Hb_001488_050 0.3353418734 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
15 Hb_002495_020 0.338605096 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
16 Hb_012702_030 0.3420185824 - - hypothetical protein POPTR_0077s002001g, partial [Populus trichocarpa]
17 Hb_000329_640 0.3426974407 - - -
18 Hb_001948_010 0.3522455272 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
19 Hb_003206_040 0.3529680136 - - Auxin efflux carrier component, putative [Ricinus communis]
20 Hb_141990_060 0.3533573292 - - -

Gene co-expression network

sample Hb_001140_230 Hb_001140_230 Hb_000733_110 Hb_000733_110 Hb_001140_230--Hb_000733_110 Hb_018616_030 Hb_018616_030 Hb_001140_230--Hb_018616_030 Hb_011113_020 Hb_011113_020 Hb_001140_230--Hb_011113_020 Hb_001140_340 Hb_001140_340 Hb_001140_230--Hb_001140_340 Hb_029475_010 Hb_029475_010 Hb_001140_230--Hb_029475_010 Hb_178817_010 Hb_178817_010 Hb_001140_230--Hb_178817_010 Hb_000733_110--Hb_018616_030 Hb_001488_050 Hb_001488_050 Hb_000733_110--Hb_001488_050 Hb_002495_020 Hb_002495_020 Hb_000733_110--Hb_002495_020 Hb_000733_110--Hb_011113_020 Hb_003102_040 Hb_003102_040 Hb_000733_110--Hb_003102_040 Hb_018616_030--Hb_001140_340 Hb_018616_030--Hb_029475_010 Hb_003947_010 Hb_003947_010 Hb_018616_030--Hb_003947_010 Hb_000521_310 Hb_000521_310 Hb_018616_030--Hb_000521_310 Hb_011113_020--Hb_178817_010 Hb_003206_040 Hb_003206_040 Hb_011113_020--Hb_003206_040 Hb_141990_060 Hb_141990_060 Hb_011113_020--Hb_141990_060 Hb_004409_010 Hb_004409_010 Hb_011113_020--Hb_004409_010 Hb_021470_010 Hb_021470_010 Hb_011113_020--Hb_021470_010 Hb_030449_010 Hb_030449_010 Hb_011113_020--Hb_030449_010 Hb_001140_340--Hb_029475_010 Hb_000329_640 Hb_000329_640 Hb_001140_340--Hb_000329_640 Hb_006711_050 Hb_006711_050 Hb_001140_340--Hb_006711_050 Hb_001140_340--Hb_178817_010 Hb_012702_030 Hb_012702_030 Hb_001140_340--Hb_012702_030 Hb_003673_030 Hb_003673_030 Hb_001140_340--Hb_003673_030 Hb_029475_010--Hb_178817_010 Hb_029475_010--Hb_006711_050 Hb_029475_010--Hb_003673_030 Hb_029475_010--Hb_012702_030 Hb_029475_010--Hb_000329_640 Hb_178817_010--Hb_003673_030 Hb_178817_010--Hb_006711_050 Hb_178817_010--Hb_012702_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.130836 0.0437785 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0388478 0

CAGE analysis