Hb_001481_010

Information

Type -
Description -
Location Contig1481: 25204-28289
Sequence    

Annotation

kegg
ID egr:104445959
description uncharacterized LOC104445959
nr
ID XP_012070035.1
description PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L719
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03435 PE=4 SV=1
Gene Ontology
ID GO:0005515
description cysteine histidine-rich c1 domain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12096: 25544-25915 , PASA_asmbl_12097: 26628-26853 , PASA_asmbl_12098: 26867-27092 , PASA_asmbl_12099: 17835-28223
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001481_010 0.0 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
2 Hb_001079_030 0.1857572908 - - PREDICTED: splicing factor U2af small subunit B-like [Jatropha curcas]
3 Hb_000803_310 0.1874314749 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
4 Hb_006694_030 0.1887330516 - - -
5 Hb_000058_050 0.208063098 - - PREDICTED: uncharacterized protein LOC105640877 [Jatropha curcas]
6 Hb_001409_050 0.2115388353 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000834_050 0.216665298 - - PREDICTED: proline-rich receptor-like protein kinase PERK1 isoform X2 [Populus euphratica]
8 Hb_002804_030 0.220579728 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
9 Hb_163430_010 0.2221556178 - - Polyneuridine-aldehyde esterase precursor, putative [Ricinus communis]
10 Hb_069841_010 0.2239434011 - - resistance protein [Quercus suber]
11 Hb_000748_110 0.2261970826 - - Glycosyltransferase QUASIMODO1, putative [Ricinus communis]
12 Hb_005724_050 0.228261198 - - -
13 Hb_118453_010 0.2284840097 - - hypothetical protein VITISV_012360 [Vitis vinifera]
14 Hb_001196_080 0.2298956118 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [Jatropha curcas]
15 Hb_001776_200 0.2323613706 - - PREDICTED: COP9 signalosome complex subunit 2 isoform X2 [Pyrus x bretschneideri]
16 Hb_001269_510 0.2332323631 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
17 Hb_000165_110 0.2354728313 - - unknown [Medicago truncatula]
18 Hb_002609_190 0.2422549018 - - PREDICTED: uncharacterized protein LOC105630609 [Jatropha curcas]
19 Hb_003589_020 0.2424114407 - - -
20 Hb_003090_150 0.2430836964 - - PREDICTED: phosphatidylinositol:ceramide inositolphosphotransferase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001481_010 Hb_001481_010 Hb_001079_030 Hb_001079_030 Hb_001481_010--Hb_001079_030 Hb_000803_310 Hb_000803_310 Hb_001481_010--Hb_000803_310 Hb_006694_030 Hb_006694_030 Hb_001481_010--Hb_006694_030 Hb_000058_050 Hb_000058_050 Hb_001481_010--Hb_000058_050 Hb_001409_050 Hb_001409_050 Hb_001481_010--Hb_001409_050 Hb_000834_050 Hb_000834_050 Hb_001481_010--Hb_000834_050 Hb_001079_030--Hb_001409_050 Hb_009193_110 Hb_009193_110 Hb_001079_030--Hb_009193_110 Hb_001196_080 Hb_001196_080 Hb_001079_030--Hb_001196_080 Hb_000139_180 Hb_000139_180 Hb_001079_030--Hb_000139_180 Hb_012038_010 Hb_012038_010 Hb_001079_030--Hb_012038_010 Hb_069841_010 Hb_069841_010 Hb_001079_030--Hb_069841_010 Hb_163430_010 Hb_163430_010 Hb_000803_310--Hb_163430_010 Hb_005675_060 Hb_005675_060 Hb_000803_310--Hb_005675_060 Hb_005724_050 Hb_005724_050 Hb_000803_310--Hb_005724_050 Hb_000803_310--Hb_000058_050 Hb_000803_310--Hb_000834_050 Hb_000563_510 Hb_000563_510 Hb_006694_030--Hb_000563_510 Hb_002965_070 Hb_002965_070 Hb_006694_030--Hb_002965_070 Hb_089114_010 Hb_089114_010 Hb_006694_030--Hb_089114_010 Hb_033930_010 Hb_033930_010 Hb_006694_030--Hb_033930_010 Hb_000317_190 Hb_000317_190 Hb_006694_030--Hb_000317_190 Hb_002609_190 Hb_002609_190 Hb_000058_050--Hb_002609_190 Hb_010368_080 Hb_010368_080 Hb_000058_050--Hb_010368_080 Hb_012305_140 Hb_012305_140 Hb_000058_050--Hb_012305_140 Hb_000076_100 Hb_000076_100 Hb_000058_050--Hb_000076_100 Hb_005568_090 Hb_005568_090 Hb_000058_050--Hb_005568_090 Hb_000058_050--Hb_001196_080 Hb_001409_050--Hb_005724_050 Hb_001053_200 Hb_001053_200 Hb_001409_050--Hb_001053_200 Hb_003216_050 Hb_003216_050 Hb_001409_050--Hb_003216_050 Hb_000732_230 Hb_000732_230 Hb_001409_050--Hb_000732_230 Hb_001951_240 Hb_001951_240 Hb_001409_050--Hb_001951_240 Hb_000008_430 Hb_000008_430 Hb_001409_050--Hb_000008_430 Hb_000748_110 Hb_000748_110 Hb_000834_050--Hb_000748_110 Hb_025905_010 Hb_025905_010 Hb_000834_050--Hb_025905_010 Hb_001408_020 Hb_001408_020 Hb_000834_050--Hb_001408_020 Hb_005214_070 Hb_005214_070 Hb_000834_050--Hb_005214_070 Hb_003849_120 Hb_003849_120 Hb_000834_050--Hb_003849_120 Hb_007290_070 Hb_007290_070 Hb_000834_050--Hb_007290_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.197627 3.53184 3.3709 0.657395 2.0971 0.4357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0120284 0 1.02125 1.33329

CAGE analysis