Hb_000019_050

Information

Type -
Description -
Location Contig19: 32763-33874
Sequence    

Annotation

kegg
ID rcu:RCOM_1445540
description hypothetical protein
nr
ID XP_012067565.1
description PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
swissprot
ID Q9LUI2
description Protein NETWORKED 1A OS=Arabidopsis thaliana GN=NET1A PE=1 SV=1
trembl
ID A0A067L067
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26859 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18869: 32598-33100 , PASA_asmbl_18870: 33160-33358
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000019_050 0.0 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
2 Hb_000025_730 0.0915413606 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
3 Hb_002073_200 0.0917406354 - - Phosphatase 2A-2 [Theobroma cacao]
4 Hb_000015_170 0.0977679507 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005016_160 0.0982293821 - - PREDICTED: transcription initiation factor TFIID subunit 8 [Jatropha curcas]
6 Hb_001766_020 0.1013241871 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
7 Hb_000260_180 0.1014849383 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]
8 Hb_000905_210 0.1017168166 - - PREDICTED: protein gar2 [Jatropha curcas]
9 Hb_003020_270 0.1021133357 - - PREDICTED: ras-related protein Rab2BV [Jatropha curcas]
10 Hb_001053_130 0.1023533831 transcription factor TF Family: mTERF hypothetical protein RCOM_1451930 [Ricinus communis]
11 Hb_005541_010 0.1041320342 - - PREDICTED: uncharacterized protein LOC105629250 [Jatropha curcas]
12 Hb_030827_020 0.104650965 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
13 Hb_000803_070 0.1054081215 - - PREDICTED: protein TRAUCO [Jatropha curcas]
14 Hb_000868_110 0.1088469855 - - PREDICTED: uncharacterized protein LOC105638026 [Jatropha curcas]
15 Hb_095296_010 0.1094543637 - - PREDICTED: syntaxin-32 [Jatropha curcas]
16 Hb_003929_280 0.1121645979 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
17 Hb_005288_170 0.1127828604 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
18 Hb_000164_020 0.1134445063 - - actin binding protein, putative [Ricinus communis]
19 Hb_000454_130 0.113486167 transcription factor TF Family: BBR-BPC conserved hypothetical protein [Ricinus communis]
20 Hb_000201_100 0.1144986169 - - PREDICTED: LOW QUALITY PROTEIN: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]

Gene co-expression network

sample Hb_000019_050 Hb_000019_050 Hb_000025_730 Hb_000025_730 Hb_000019_050--Hb_000025_730 Hb_002073_200 Hb_002073_200 Hb_000019_050--Hb_002073_200 Hb_000015_170 Hb_000015_170 Hb_000019_050--Hb_000015_170 Hb_005016_160 Hb_005016_160 Hb_000019_050--Hb_005016_160 Hb_001766_020 Hb_001766_020 Hb_000019_050--Hb_001766_020 Hb_000260_180 Hb_000260_180 Hb_000019_050--Hb_000260_180 Hb_000025_730--Hb_002073_200 Hb_024621_040 Hb_024621_040 Hb_000025_730--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_000868_110 Hb_000868_110 Hb_002073_200--Hb_000868_110 Hb_013358_040 Hb_013358_040 Hb_002073_200--Hb_013358_040 Hb_000738_020 Hb_000738_020 Hb_002073_200--Hb_000738_020 Hb_164010_040 Hb_164010_040 Hb_002073_200--Hb_164010_040 Hb_095296_010 Hb_095296_010 Hb_002073_200--Hb_095296_010 Hb_000120_130 Hb_000120_130 Hb_000015_170--Hb_000120_130 Hb_004916_010 Hb_004916_010 Hb_000015_170--Hb_004916_010 Hb_006275_020 Hb_006275_020 Hb_000015_170--Hb_006275_020 Hb_002157_080 Hb_002157_080 Hb_000015_170--Hb_002157_080 Hb_000061_030 Hb_000061_030 Hb_000015_170--Hb_000061_030 Hb_000015_170--Hb_000025_730 Hb_005541_010 Hb_005541_010 Hb_005016_160--Hb_005541_010 Hb_000334_220 Hb_000334_220 Hb_005016_160--Hb_000334_220 Hb_012055_060 Hb_012055_060 Hb_005016_160--Hb_012055_060 Hb_003052_140 Hb_003052_140 Hb_005016_160--Hb_003052_140 Hb_012564_030 Hb_012564_030 Hb_005016_160--Hb_012564_030 Hb_000336_250 Hb_000336_250 Hb_005016_160--Hb_000336_250 Hb_001104_170 Hb_001104_170 Hb_001766_020--Hb_001104_170 Hb_000442_010 Hb_000442_010 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_004440_040 Hb_004440_040 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160 Hb_001410_020 Hb_001410_020 Hb_000260_180--Hb_001410_020 Hb_006588_210 Hb_006588_210 Hb_000260_180--Hb_006588_210 Hb_012779_090 Hb_012779_090 Hb_000260_180--Hb_012779_090 Hb_000260_180--Hb_162275_050 Hb_000260_180--Hb_005541_010 Hb_000260_180--Hb_000025_730
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35247 3.00213 1.61946 1.47896 1.32434 1.00647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.988271 2.28584 1.58646 0.848133 1.39108

CAGE analysis