Hb_155599_010

Information

Type transcription factor
Description TF Family: C2H2
Location Contig155599: 189-1775
Sequence    

Annotation

kegg
ID rcu:RCOM_1375410
description nucleic acid binding protein, putative
nr
ID XP_002529014.1
description nucleic acid binding protein, putative [Ricinus communis]
swissprot
ID Q2V3L3
description Uncharacterized zinc finger protein At4g06634 OS=Arabidopsis thaliana GN=At4g06634 PE=1 SV=1
trembl
ID B9SSP5
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1375410 PE=4 SV=1
Gene Ontology
ID GO:0043565
description uncharacterized zinc finger protein at4g06634

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155599_010 0.0 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
2 Hb_001766_020 0.123181828 - - PREDICTED: probable galacturonosyltransferase 14 [Populus euphratica]
3 Hb_009393_180 0.1433050812 - - PREDICTED: uncharacterized protein LOC101292333 [Fragaria vesca subsp. vesca]
4 Hb_000019_050 0.1435895384 - - PREDICTED: protein NETWORKED 3A-like [Jatropha curcas]
5 Hb_003411_110 0.1459317525 - - PREDICTED: uncharacterized protein LOC105642013 [Jatropha curcas]
6 Hb_000832_030 0.1467728801 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
7 Hb_000084_030 0.1482003226 - - conserved hypothetical protein [Ricinus communis]
8 Hb_005207_050 0.1489057653 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 39 [Jatropha curcas]
9 Hb_007403_110 0.1517143375 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 4-like [Jatropha curcas]
10 Hb_000019_040 0.1530502764 - - PREDICTED: mitochondrial phosphate carrier protein 3, mitochondrial [Jatropha curcas]
11 Hb_000905_210 0.154921896 - - PREDICTED: protein gar2 [Jatropha curcas]
12 Hb_012762_030 0.1563683586 - - PREDICTED: uncharacterized protein LOC105634062 [Jatropha curcas]
13 Hb_008695_090 0.1567767649 - - PREDICTED: mitogen-activated protein kinase kinase kinase 1 [Jatropha curcas]
14 Hb_000164_020 0.1587679159 - - actin binding protein, putative [Ricinus communis]
15 Hb_000211_120 0.1590053546 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
16 Hb_010381_030 0.1592267451 - - PREDICTED: uncharacterized protein LOC105631461 [Jatropha curcas]
17 Hb_004324_300 0.1601692747 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
18 Hb_000002_240 0.161140783 - - PREDICTED: transcription factor bHLH104 [Jatropha curcas]
19 Hb_000086_340 0.1628188087 - - PREDICTED: uncharacterized protein LOC100253191 [Vitis vinifera]
20 Hb_009545_090 0.1632030518 - - hypothetical protein JCGZ_02186 [Jatropha curcas]

Gene co-expression network

sample Hb_155599_010 Hb_155599_010 Hb_001766_020 Hb_001766_020 Hb_155599_010--Hb_001766_020 Hb_009393_180 Hb_009393_180 Hb_155599_010--Hb_009393_180 Hb_000019_050 Hb_000019_050 Hb_155599_010--Hb_000019_050 Hb_003411_110 Hb_003411_110 Hb_155599_010--Hb_003411_110 Hb_000832_030 Hb_000832_030 Hb_155599_010--Hb_000832_030 Hb_000084_030 Hb_000084_030 Hb_155599_010--Hb_000084_030 Hb_001104_170 Hb_001104_170 Hb_001766_020--Hb_001104_170 Hb_000442_010 Hb_000442_010 Hb_001766_020--Hb_000442_010 Hb_003728_040 Hb_003728_040 Hb_001766_020--Hb_003728_040 Hb_004440_040 Hb_004440_040 Hb_001766_020--Hb_004440_040 Hb_000905_210 Hb_000905_210 Hb_001766_020--Hb_000905_210 Hb_005389_160 Hb_005389_160 Hb_001766_020--Hb_005389_160 Hb_030116_010 Hb_030116_010 Hb_009393_180--Hb_030116_010 Hb_004917_040 Hb_004917_040 Hb_009393_180--Hb_004917_040 Hb_075230_010 Hb_075230_010 Hb_009393_180--Hb_075230_010 Hb_000211_120 Hb_000211_120 Hb_009393_180--Hb_000211_120 Hb_046117_010 Hb_046117_010 Hb_009393_180--Hb_046117_010 Hb_000025_730 Hb_000025_730 Hb_000019_050--Hb_000025_730 Hb_002073_200 Hb_002073_200 Hb_000019_050--Hb_002073_200 Hb_000015_170 Hb_000015_170 Hb_000019_050--Hb_000015_170 Hb_005016_160 Hb_005016_160 Hb_000019_050--Hb_005016_160 Hb_000019_050--Hb_001766_020 Hb_000260_180 Hb_000260_180 Hb_000019_050--Hb_000260_180 Hb_003411_110--Hb_000832_030 Hb_116086_010 Hb_116086_010 Hb_003411_110--Hb_116086_010 Hb_011930_110 Hb_011930_110 Hb_003411_110--Hb_011930_110 Hb_000334_220 Hb_000334_220 Hb_003411_110--Hb_000334_220 Hb_003411_110--Hb_000084_030 Hb_002284_280 Hb_002284_280 Hb_003411_110--Hb_002284_280 Hb_000832_030--Hb_116086_010 Hb_000832_030--Hb_000334_220 Hb_003373_040 Hb_003373_040 Hb_000832_030--Hb_003373_040 Hb_093084_070 Hb_093084_070 Hb_000832_030--Hb_093084_070 Hb_001123_290 Hb_001123_290 Hb_000832_030--Hb_001123_290 Hb_002411_030 Hb_002411_030 Hb_000084_030--Hb_002411_030 Hb_006346_040 Hb_006346_040 Hb_000084_030--Hb_006346_040 Hb_003299_030 Hb_003299_030 Hb_000084_030--Hb_003299_030 Hb_000457_050 Hb_000457_050 Hb_000084_030--Hb_000457_050 Hb_001477_070 Hb_001477_070 Hb_000084_030--Hb_001477_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.462374 0.696521 0.364261 0.238937 0.0702906 0.240776
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.167126 0.394138 0.233798 0.133776 0.129541

CAGE analysis