Hb_001638_180

Information

Type -
Description -
Location Contig1638: 135937-140185
Sequence    

Annotation

kegg
ID rcu:RCOM_0732560
description d-lactate dehydrogenase, putative (EC:1.1.3.8)
nr
ID XP_012083815.1
description PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
swissprot
ID O81032
description Probable L-gulonolactone oxidase 6 OS=Arabidopsis thaliana GN=GULLO6 PE=3 SV=1
trembl
ID B9S3D0
description D-lactate dehydrogenase, putative OS=Ricinus communis GN=RCOM_0732560 PE=4 SV=1
Gene Ontology
ID GO:0016020
description l-gulonolactone oxidase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001638_180 0.0 - - PREDICTED: D-arabinono-1,4-lactone oxidase-like [Jatropha curcas]
2 Hb_034299_070 0.2334492748 - - actin binding protein, putative [Ricinus communis]
3 Hb_000483_400 0.2417134277 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
4 Hb_000179_120 0.2441374645 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
5 Hb_004453_070 0.2480804431 transcription factor TF Family: CPP PREDICTED: CRC domain-containing protein TSO1-like isoform X1 [Jatropha curcas]
6 Hb_033354_020 0.2504150339 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_002686_260 0.2521190754 transcription factor TF Family: NAC NAC domain-containing protein 21/22, putative [Ricinus communis]
8 Hb_123301_010 0.2521193045 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003875_010 0.2592653785 - - hypothetical protein POPTR_0002s14490g, partial [Populus trichocarpa]
10 Hb_000649_340 0.26254831 - - PREDICTED: dynein light chain 1, cytoplasmic [Jatropha curcas]
11 Hb_000046_270 0.2654383264 - - PREDICTED: sodium/hydrogen exchanger 2-like isoform X2 [Jatropha curcas]
12 Hb_126711_010 0.2662458714 - - JAZ10 [Hevea brasiliensis]
13 Hb_000311_040 0.2668234145 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
14 Hb_032972_010 0.2726045704 - - Glycolipid transfer protein, putative [Ricinus communis]
15 Hb_000217_020 0.2735726865 - - AMME syndrome candidateprotein 1 protein, putative [Ricinus communis]
16 Hb_000028_260 0.2744981242 - - hypothetical protein glysoja_041948 [Glycine soja]
17 Hb_000260_280 0.2761660227 - - auxin:hydrogen symporter, putative [Ricinus communis]
18 Hb_001329_030 0.2775950454 - - conserved hypothetical protein [Ricinus communis]
19 Hb_014720_100 0.2776127861 - - PREDICTED: probable boron transporter 2 [Jatropha curcas]
20 Hb_001195_410 0.2782701798 - - PREDICTED: deoxyuridine 5'-triphosphate nucleotidohydrolase [Jatropha curcas]

Gene co-expression network

sample Hb_001638_180 Hb_001638_180 Hb_034299_070 Hb_034299_070 Hb_001638_180--Hb_034299_070 Hb_000483_400 Hb_000483_400 Hb_001638_180--Hb_000483_400 Hb_000179_120 Hb_000179_120 Hb_001638_180--Hb_000179_120 Hb_004453_070 Hb_004453_070 Hb_001638_180--Hb_004453_070 Hb_033354_020 Hb_033354_020 Hb_001638_180--Hb_033354_020 Hb_002686_260 Hb_002686_260 Hb_001638_180--Hb_002686_260 Hb_131684_010 Hb_131684_010 Hb_034299_070--Hb_131684_010 Hb_034299_070--Hb_004453_070 Hb_000796_020 Hb_000796_020 Hb_034299_070--Hb_000796_020 Hb_104571_010 Hb_104571_010 Hb_034299_070--Hb_104571_010 Hb_002582_080 Hb_002582_080 Hb_034299_070--Hb_002582_080 Hb_004162_060 Hb_004162_060 Hb_034299_070--Hb_004162_060 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_175933_010 Hb_175933_010 Hb_000483_400--Hb_175933_010 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_000217_010 Hb_000217_010 Hb_000179_120--Hb_000217_010 Hb_000179_120--Hb_034299_070 Hb_000345_060 Hb_000345_060 Hb_000179_120--Hb_000345_060 Hb_000179_120--Hb_000483_400 Hb_002572_030 Hb_002572_030 Hb_000179_120--Hb_002572_030 Hb_023301_010 Hb_023301_010 Hb_000179_120--Hb_023301_010 Hb_001195_410 Hb_001195_410 Hb_004453_070--Hb_001195_410 Hb_004453_070--Hb_000796_020 Hb_006569_060 Hb_006569_060 Hb_004453_070--Hb_006569_060 Hb_000776_060 Hb_000776_060 Hb_004453_070--Hb_000776_060 Hb_012362_030 Hb_012362_030 Hb_004453_070--Hb_012362_030 Hb_000062_090 Hb_000062_090 Hb_004453_070--Hb_000062_090 Hb_001377_280 Hb_001377_280 Hb_033354_020--Hb_001377_280 Hb_033354_020--Hb_000217_020 Hb_111985_110 Hb_111985_110 Hb_033354_020--Hb_111985_110 Hb_003589_080 Hb_003589_080 Hb_033354_020--Hb_003589_080 Hb_001314_030 Hb_001314_030 Hb_033354_020--Hb_001314_030 Hb_000362_180 Hb_000362_180 Hb_033354_020--Hb_000362_180 Hb_005332_040 Hb_005332_040 Hb_002686_260--Hb_005332_040 Hb_001922_030 Hb_001922_030 Hb_002686_260--Hb_001922_030 Hb_002097_140 Hb_002097_140 Hb_002686_260--Hb_002097_140 Hb_014720_100 Hb_014720_100 Hb_002686_260--Hb_014720_100 Hb_005408_070 Hb_005408_070 Hb_002686_260--Hb_005408_070 Hb_123301_010 Hb_123301_010 Hb_002686_260--Hb_123301_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0257824 0.0304382 0.0972564 0.501405 0.0230429 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157007 0.0617656 0.0777832 0.0492136 0

CAGE analysis