Hb_004449_060

Information

Type -
Description -
Location Contig4449: 46555-49480
Sequence    

Annotation

kegg
ID rcu:RCOM_0622510
description hypothetical protein
nr
ID XP_012069225.1
description PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SHW4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0622510 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004449_060 0.0 - - PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
2 Hb_002248_010 0.1564161047 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
3 Hb_000032_460 0.1891180738 - - calcineurin B, putative [Ricinus communis]
4 Hb_001675_170 0.2027686107 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 5 [Malus domestica]
5 Hb_002909_080 0.2051460529 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
6 Hb_001279_240 0.2064649288 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
7 Hb_004724_170 0.2094653645 - - PREDICTED: rho GTPase-activating protein 1 [Jatropha curcas]
8 Hb_033312_080 0.2103451191 - - aldose-1-epimerase, putative [Ricinus communis]
9 Hb_003097_130 0.2131248104 - - conserved hypothetical protein [Ricinus communis]
10 Hb_021065_010 0.2169654202 - - PREDICTED: wall-associated receptor kinase 2-like isoform X2 [Gossypium raimondii]
11 Hb_008747_010 0.2207305974 - - PREDICTED: protein argonaute 2-like isoform X1 [Jatropha curcas]
12 Hb_001488_190 0.2213318182 - - alpha-amylase, putative [Ricinus communis]
13 Hb_008066_080 0.2268104712 - - PREDICTED: GDSL esterase/lipase 1-like [Jatropha curcas]
14 Hb_005168_020 0.2276444012 - - PREDICTED: U-box domain-containing protein 30-like [Jatropha curcas]
15 Hb_000979_260 0.2304302129 - - ARF GTPase activator, putative [Ricinus communis]
16 Hb_000140_500 0.2308851812 - - ABC transporter family protein [Hevea brasiliensis]
17 Hb_001331_010 0.2330869671 - - hypothetical protein CISIN_1g039303mg, partial [Citrus sinensis]
18 Hb_042083_030 0.2347198826 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_000529_010 0.2363095546 - - cyclin d, putative [Ricinus communis]
20 Hb_048476_140 0.2385746524 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]

Gene co-expression network

sample Hb_004449_060 Hb_004449_060 Hb_002248_010 Hb_002248_010 Hb_004449_060--Hb_002248_010 Hb_000032_460 Hb_000032_460 Hb_004449_060--Hb_000032_460 Hb_001675_170 Hb_001675_170 Hb_004449_060--Hb_001675_170 Hb_002909_080 Hb_002909_080 Hb_004449_060--Hb_002909_080 Hb_001279_240 Hb_001279_240 Hb_004449_060--Hb_001279_240 Hb_004724_170 Hb_004724_170 Hb_004449_060--Hb_004724_170 Hb_041692_010 Hb_041692_010 Hb_002248_010--Hb_041692_010 Hb_000032_610 Hb_000032_610 Hb_002248_010--Hb_000032_610 Hb_048476_140 Hb_048476_140 Hb_002248_010--Hb_048476_140 Hb_019570_010 Hb_019570_010 Hb_002248_010--Hb_019570_010 Hb_000416_090 Hb_000416_090 Hb_002248_010--Hb_000416_090 Hb_003688_210 Hb_003688_210 Hb_000032_460--Hb_003688_210 Hb_010931_020 Hb_010931_020 Hb_000032_460--Hb_010931_020 Hb_002301_110 Hb_002301_110 Hb_000032_460--Hb_002301_110 Hb_003050_030 Hb_003050_030 Hb_000032_460--Hb_003050_030 Hb_005168_020 Hb_005168_020 Hb_000032_460--Hb_005168_020 Hb_000032_250 Hb_000032_250 Hb_001675_170--Hb_000032_250 Hb_001348_010 Hb_001348_010 Hb_001675_170--Hb_001348_010 Hb_003097_130 Hb_003097_130 Hb_001675_170--Hb_003097_130 Hb_021065_010 Hb_021065_010 Hb_001675_170--Hb_021065_010 Hb_000529_010 Hb_000529_010 Hb_001675_170--Hb_000529_010 Hb_010672_050 Hb_010672_050 Hb_001675_170--Hb_010672_050 Hb_000979_260 Hb_000979_260 Hb_002909_080--Hb_000979_260 Hb_029584_160 Hb_029584_160 Hb_002909_080--Hb_029584_160 Hb_008066_080 Hb_008066_080 Hb_002909_080--Hb_008066_080 Hb_112064_010 Hb_112064_010 Hb_002909_080--Hb_112064_010 Hb_008747_010 Hb_008747_010 Hb_002909_080--Hb_008747_010 Hb_001353_020 Hb_001353_020 Hb_002909_080--Hb_001353_020 Hb_000847_130 Hb_000847_130 Hb_001279_240--Hb_000847_130 Hb_001348_040 Hb_001348_040 Hb_001279_240--Hb_001348_040 Hb_004122_010 Hb_004122_010 Hb_001279_240--Hb_004122_010 Hb_001279_240--Hb_003097_130 Hb_000109_140 Hb_000109_140 Hb_001279_240--Hb_000109_140 Hb_001279_240--Hb_041692_010 Hb_004724_170--Hb_000979_260 Hb_004041_050 Hb_004041_050 Hb_004724_170--Hb_004041_050 Hb_097335_010 Hb_097335_010 Hb_004724_170--Hb_097335_010 Hb_011242_010 Hb_011242_010 Hb_004724_170--Hb_011242_010 Hb_001180_010 Hb_001180_010 Hb_004724_170--Hb_001180_010 Hb_001433_150 Hb_001433_150 Hb_004724_170--Hb_001433_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0252311 0.385436 0.294476 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.152675 0.210743 0.306336

CAGE analysis