Hb_002248_010

Information

Type -
Description -
Location Contig2248: 7971-18118
Sequence    

Annotation

kegg
ID pop:POPTR_0003s14910g
description POPTRDRAFT_853558; hypothetical protein
nr
ID XP_011022383.1
description PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
swissprot
ID Q9LHD2
description Probable galacturonosyltransferase-like 10 OS=Arabidopsis thaliana GN=GATL10 PE=2 SV=1
trembl
ID U5GJF5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s14910g PE=4 SV=1
Gene Ontology
ID GO:0016740
description galacturonosyltransferase 6 -like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23350: 9163-9512 , PASA_asmbl_23352: 16888-17997
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002248_010 0.0 - - PREDICTED: uncharacterized protein LOC105124180 [Populus euphratica]
2 Hb_041692_010 0.1501917821 - - annexin [Manihot esculenta]
3 Hb_000032_610 0.1522567092 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic-like [Jatropha curcas]
4 Hb_048476_140 0.156242176 - - PREDICTED: dynamin-related protein 1C [Jatropha curcas]
5 Hb_004449_060 0.1564161047 - - PREDICTED: uncharacterized protein LOC105631660 [Jatropha curcas]
6 Hb_019570_010 0.159039592 - - lyase, putative [Ricinus communis]
7 Hb_000416_090 0.1615255063 - - Aquaporin NIP1.1, putative [Ricinus communis]
8 Hb_001279_240 0.1648127484 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105633500 [Jatropha curcas]
9 Hb_004116_050 0.1654081789 - - PREDICTED: cytochrome P450 90A1 [Jatropha curcas]
10 Hb_008725_090 0.1654137134 - - PREDICTED: uncharacterized protein LOC105642581 [Jatropha curcas]
11 Hb_000951_090 0.1660710037 - - Oligopeptide transporter, putative [Ricinus communis]
12 Hb_001244_070 0.1675256689 - - hypothetical protein POPTR_0004s13470g [Populus trichocarpa]
13 Hb_005144_060 0.1681105344 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
14 Hb_001278_090 0.16941649 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
15 Hb_002949_020 0.1697327736 transcription factor TF Family: bHLH hypothetical protein POPTR_0002s23650g [Populus trichocarpa]
16 Hb_000181_220 0.1699430406 - - PREDICTED: MATE efflux family protein LAL5-like isoform X2 [Jatropha curcas]
17 Hb_003097_130 0.1714991368 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002805_180 0.1721502795 - - conserved hypothetical protein [Ricinus communis]
19 Hb_029639_030 0.17265936 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 2-like [Jatropha curcas]
20 Hb_000347_100 0.172930603 transcription factor TF Family: C3H hypothetical protein RCOM_0684740 [Ricinus communis]

Gene co-expression network

sample Hb_002248_010 Hb_002248_010 Hb_041692_010 Hb_041692_010 Hb_002248_010--Hb_041692_010 Hb_000032_610 Hb_000032_610 Hb_002248_010--Hb_000032_610 Hb_048476_140 Hb_048476_140 Hb_002248_010--Hb_048476_140 Hb_004449_060 Hb_004449_060 Hb_002248_010--Hb_004449_060 Hb_019570_010 Hb_019570_010 Hb_002248_010--Hb_019570_010 Hb_000416_090 Hb_000416_090 Hb_002248_010--Hb_000416_090 Hb_000748_120 Hb_000748_120 Hb_041692_010--Hb_000748_120 Hb_051663_010 Hb_051663_010 Hb_041692_010--Hb_051663_010 Hb_001516_010 Hb_001516_010 Hb_041692_010--Hb_001516_010 Hb_000347_100 Hb_000347_100 Hb_041692_010--Hb_000347_100 Hb_001541_130 Hb_001541_130 Hb_041692_010--Hb_001541_130 Hb_008725_090 Hb_008725_090 Hb_041692_010--Hb_008725_090 Hb_000465_410 Hb_000465_410 Hb_000032_610--Hb_000465_410 Hb_005237_020 Hb_005237_020 Hb_000032_610--Hb_005237_020 Hb_002701_070 Hb_002701_070 Hb_000032_610--Hb_002701_070 Hb_001180_010 Hb_001180_010 Hb_000032_610--Hb_001180_010 Hb_019613_030 Hb_019613_030 Hb_000032_610--Hb_019613_030 Hb_000032_610--Hb_048476_140 Hb_000076_030 Hb_000076_030 Hb_048476_140--Hb_000076_030 Hb_048476_140--Hb_001180_010 Hb_004041_050 Hb_004041_050 Hb_048476_140--Hb_004041_050 Hb_022693_110 Hb_022693_110 Hb_048476_140--Hb_022693_110 Hb_042083_030 Hb_042083_030 Hb_048476_140--Hb_042083_030 Hb_161396_010 Hb_161396_010 Hb_048476_140--Hb_161396_010 Hb_000032_460 Hb_000032_460 Hb_004449_060--Hb_000032_460 Hb_001675_170 Hb_001675_170 Hb_004449_060--Hb_001675_170 Hb_002909_080 Hb_002909_080 Hb_004449_060--Hb_002909_080 Hb_001279_240 Hb_001279_240 Hb_004449_060--Hb_001279_240 Hb_004724_170 Hb_004724_170 Hb_004449_060--Hb_004724_170 Hb_000732_220 Hb_000732_220 Hb_019570_010--Hb_000732_220 Hb_004592_010 Hb_004592_010 Hb_019570_010--Hb_004592_010 Hb_001104_020 Hb_001104_020 Hb_019570_010--Hb_001104_020 Hb_002805_180 Hb_002805_180 Hb_019570_010--Hb_002805_180 Hb_000008_150 Hb_000008_150 Hb_019570_010--Hb_000008_150 Hb_005144_060 Hb_005144_060 Hb_019570_010--Hb_005144_060 Hb_004116_050 Hb_004116_050 Hb_000416_090--Hb_004116_050 Hb_001405_040 Hb_001405_040 Hb_000416_090--Hb_001405_040 Hb_029639_030 Hb_029639_030 Hb_000416_090--Hb_029639_030 Hb_000181_220 Hb_000181_220 Hb_000416_090--Hb_000181_220 Hb_000416_090--Hb_019570_010 Hb_000318_010 Hb_000318_010 Hb_000416_090--Hb_000318_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.035844 0.119315 3.10787 2.50379 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0818756 0.0322022 0.359289 1.52239 2.59802

CAGE analysis