Hb_009467_040

Information

Type -
Description -
Location Contig9467: 25497-26564
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01660g
description POPTRDRAFT_574759; hypothetical protein
nr
ID XP_012072893.1
description PREDICTED: putative B3 domain-containing protein At3g24850 [Jatropha curcas]
swissprot
ID Q9FFM6
description Putative B3 domain-containing protein At5g35780 OS=Arabidopsis thaliana GN=At5g35780 PE=3 SV=2
trembl
ID A0A067KMS8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08278 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009467_040 0.0 - - PREDICTED: putative B3 domain-containing protein At3g24850 [Jatropha curcas]
2 Hb_000135_070 0.2125767175 - - PREDICTED: inositol oxygenase 1-like [Jatropha curcas]
3 Hb_001558_030 0.2139465972 - - phosphofructokinase [Hevea brasiliensis]
4 Hb_000181_020 0.2206959387 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like [Jatropha curcas]
5 Hb_182680_010 0.2262954383 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
6 Hb_001500_070 0.2341144685 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004129_050 0.2371524494 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase-like protein 5 [Jatropha curcas]
8 Hb_002213_090 0.2406134211 - - PREDICTED: uncharacterized protein LOC105640147 [Jatropha curcas]
9 Hb_004041_100 0.2464569574 - - -
10 Hb_000041_060 0.2542627073 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
11 Hb_002539_020 0.2575537969 - - hypothetical protein CISIN_1g007216mg [Citrus sinensis]
12 Hb_068804_020 0.258139845 - - hypothetical protein AMTR_s00046p00231970 [Amborella trichopoda]
13 Hb_003626_050 0.2605915874 - - malic enzyme, putative [Ricinus communis]
14 Hb_001780_150 0.2612685326 - - ceramidase, putative [Ricinus communis]
15 Hb_003813_120 0.2639338358 - - zinc finger protein, putative [Ricinus communis]
16 Hb_003626_040 0.2655798974 - - PREDICTED: probable 2-oxoglutarate-dependent dioxygenase At3g49630 isoform X2 [Jatropha curcas]
17 Hb_000347_110 0.2663777606 - - BnaA05g25330D [Brassica napus]
18 Hb_000094_370 0.2692878851 - - -
19 Hb_007423_020 0.2713417129 - - 2-nitropropane dioxygenase precursor, putative [Ricinus communis]
20 Hb_003906_170 0.2715002894 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009467_040 Hb_009467_040 Hb_000135_070 Hb_000135_070 Hb_009467_040--Hb_000135_070 Hb_001558_030 Hb_001558_030 Hb_009467_040--Hb_001558_030 Hb_000181_020 Hb_000181_020 Hb_009467_040--Hb_000181_020 Hb_182680_010 Hb_182680_010 Hb_009467_040--Hb_182680_010 Hb_001500_070 Hb_001500_070 Hb_009467_040--Hb_001500_070 Hb_004129_050 Hb_004129_050 Hb_009467_040--Hb_004129_050 Hb_179924_010 Hb_179924_010 Hb_000135_070--Hb_179924_010 Hb_000135_070--Hb_001500_070 Hb_000135_070--Hb_004129_050 Hb_001731_030 Hb_001731_030 Hb_000135_070--Hb_001731_030 Hb_007185_040 Hb_007185_040 Hb_000135_070--Hb_007185_040 Hb_003626_050 Hb_003626_050 Hb_000135_070--Hb_003626_050 Hb_000046_610 Hb_000046_610 Hb_001558_030--Hb_000046_610 Hb_004607_040 Hb_004607_040 Hb_001558_030--Hb_004607_040 Hb_002539_010 Hb_002539_010 Hb_001558_030--Hb_002539_010 Hb_000116_590 Hb_000116_590 Hb_001558_030--Hb_000116_590 Hb_000116_120 Hb_000116_120 Hb_001558_030--Hb_000116_120 Hb_004041_100 Hb_004041_100 Hb_000181_020--Hb_004041_100 Hb_000625_030 Hb_000625_030 Hb_000181_020--Hb_000625_030 Hb_000347_110 Hb_000347_110 Hb_000181_020--Hb_000347_110 Hb_011360_060 Hb_011360_060 Hb_000181_020--Hb_011360_060 Hb_006846_120 Hb_006846_120 Hb_000181_020--Hb_006846_120 Hb_000181_020--Hb_001500_070 Hb_004143_120 Hb_004143_120 Hb_182680_010--Hb_004143_120 Hb_000343_100 Hb_000343_100 Hb_182680_010--Hb_000343_100 Hb_007943_160 Hb_007943_160 Hb_182680_010--Hb_007943_160 Hb_000209_110 Hb_000209_110 Hb_182680_010--Hb_000209_110 Hb_003428_100 Hb_003428_100 Hb_182680_010--Hb_003428_100 Hb_001500_070--Hb_003626_050 Hb_001500_070--Hb_004041_100 Hb_002213_090 Hb_002213_090 Hb_001500_070--Hb_002213_090 Hb_001500_070--Hb_000625_030 Hb_001500_070--Hb_000347_110 Hb_012325_010 Hb_012325_010 Hb_001500_070--Hb_012325_010 Hb_000244_280 Hb_000244_280 Hb_004129_050--Hb_000244_280 Hb_000041_060 Hb_000041_060 Hb_004129_050--Hb_000041_060 Hb_009732_020 Hb_009732_020 Hb_004129_050--Hb_009732_020 Hb_006717_070 Hb_006717_070 Hb_004129_050--Hb_006717_070 Hb_004129_050--Hb_003626_050 Hb_012545_090 Hb_012545_090 Hb_004129_050--Hb_012545_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0509912 0.061965 0.0663693 0.0396182 0.0939871
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0934389 0.0367469 0 0.354124 0.0755151

CAGE analysis