Hb_017987_010

Information

Type -
Description -
Location Contig17987: 6772-9127
Sequence    

Annotation

kegg
ID rcu:RCOM_1585600
description acc synthase, putative (EC:4.4.1.14)
nr
ID XP_011017063.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
swissprot
ID Q42881
description 1-aminocyclopropane-1-carboxylate synthase 3 OS=Solanum lycopersicum GN=ACS3 PE=1 SV=1
trembl
ID B9R6U5
description Acc synthase, putative OS=Ricinus communis GN=RCOM_1585600 PE=3 SV=1
Gene Ontology
ID GO:0016847
description 1-aminocyclopropane-1-carboxylate synthase 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_010 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 3-like isoform X1 [Populus euphratica]
2 Hb_000684_060 0.1322479261 - - hypothetical protein POPTR_0006s13170g [Populus trichocarpa]
3 Hb_010253_010 0.1373811146 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent) [Amborella trichopoda]
4 Hb_007926_020 0.1388823548 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP6 [Jatropha curcas]
5 Hb_148986_010 0.140225303 - - unnamed protein product [Vitis vinifera]
6 Hb_008953_010 0.1418105302 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
7 Hb_003857_010 0.1429745154 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002929_010 0.1452915805 - - PREDICTED: uncharacterized protein LOC105631517 [Jatropha curcas]
9 Hb_001142_040 0.146347418 - - PREDICTED: protein YLS9 [Jatropha curcas]
10 Hb_000329_160 0.1469751408 - - PREDICTED: pectinesterase 2 isoform X1 [Jatropha curcas]
11 Hb_002184_040 0.1471445404 transcription factor TF Family: bHLH transcription factor, putative [Ricinus communis]
12 Hb_003663_030 0.1490494266 - - PREDICTED: early nodulin-93-like [Jatropha curcas]
13 Hb_006925_010 0.149949307 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
14 Hb_080238_010 0.1518789033 - - Reticuline oxidase precursor, putative [Ricinus communis]
15 Hb_001019_220 0.1523097205 - - hypothetical protein POPTR_0004s19470g [Populus trichocarpa]
16 Hb_000375_040 0.1524382214 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
17 Hb_019392_010 0.1526619856 - - PREDICTED: LOW QUALITY PROTEIN: probable S-adenosylmethionine-dependent methyltransferase At5g38100 [Jatropha curcas]
18 Hb_001040_190 0.1558170755 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor B-2a-like [Jatropha curcas]
19 Hb_003334_020 0.1566628255 - - hypothetical protein CISIN_1g041546mg [Citrus sinensis]
20 Hb_000086_710 0.1573597419 - - PREDICTED: feruloyl CoA ortho-hydroxylase 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_017987_010 Hb_017987_010 Hb_000684_060 Hb_000684_060 Hb_017987_010--Hb_000684_060 Hb_010253_010 Hb_010253_010 Hb_017987_010--Hb_010253_010 Hb_007926_020 Hb_007926_020 Hb_017987_010--Hb_007926_020 Hb_148986_010 Hb_148986_010 Hb_017987_010--Hb_148986_010 Hb_008953_010 Hb_008953_010 Hb_017987_010--Hb_008953_010 Hb_003857_010 Hb_003857_010 Hb_017987_010--Hb_003857_010 Hb_000684_060--Hb_148986_010 Hb_080238_010 Hb_080238_010 Hb_000684_060--Hb_080238_010 Hb_002929_010 Hb_002929_010 Hb_000684_060--Hb_002929_010 Hb_003334_020 Hb_003334_020 Hb_000684_060--Hb_003334_020 Hb_006925_010 Hb_006925_010 Hb_000684_060--Hb_006925_010 Hb_003663_030 Hb_003663_030 Hb_000684_060--Hb_003663_030 Hb_043903_010 Hb_043903_010 Hb_010253_010--Hb_043903_010 Hb_000375_040 Hb_000375_040 Hb_010253_010--Hb_000375_040 Hb_000405_040 Hb_000405_040 Hb_010253_010--Hb_000405_040 Hb_003446_030 Hb_003446_030 Hb_010253_010--Hb_003446_030 Hb_010253_010--Hb_008953_010 Hb_007926_020--Hb_003857_010 Hb_001142_040 Hb_001142_040 Hb_007926_020--Hb_001142_040 Hb_002184_040 Hb_002184_040 Hb_007926_020--Hb_002184_040 Hb_001652_060 Hb_001652_060 Hb_007926_020--Hb_001652_060 Hb_078903_010 Hb_078903_010 Hb_007926_020--Hb_078903_010 Hb_123560_010 Hb_123560_010 Hb_007926_020--Hb_123560_010 Hb_019392_010 Hb_019392_010 Hb_148986_010--Hb_019392_010 Hb_148986_010--Hb_006925_010 Hb_001266_110 Hb_001266_110 Hb_148986_010--Hb_001266_110 Hb_148986_010--Hb_003334_020 Hb_000086_710 Hb_000086_710 Hb_148986_010--Hb_000086_710 Hb_008953_010--Hb_000375_040 Hb_008953_010--Hb_043903_010 Hb_000828_030 Hb_000828_030 Hb_008953_010--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_008953_010--Hb_081224_010 Hb_005726_030 Hb_005726_030 Hb_008953_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_008953_010--Hb_061590_010 Hb_003857_010--Hb_001142_040 Hb_003857_010--Hb_002184_040 Hb_003857_010--Hb_001652_060 Hb_003857_010--Hb_078903_010 Hb_003857_010--Hb_123560_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0108788 0 0 0.0147845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.47092 0

CAGE analysis