Hb_081224_010

Information

Type -
Description -
Location Contig81224: 3-2292
Sequence    

Annotation

kegg
ID brp:103833877
description probable LRR receptor-like serine/threonine-protein kinase At1g51860
nr
ID EEE62769.1
description hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
swissprot
ID Q9XI96
description Proline-rich receptor-like protein kinase PERK7 OS=Arabidopsis thaliana GN=PERK7 PE=2 SV=1
trembl
ID B9FJ25
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_17572 PE=3 SV=1
Gene Ontology
ID GO:0004672
description proline-rich receptor-like protein kinase perk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_081224_010 0.0 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
2 Hb_000828_030 0.0848646928 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_005433_050 0.0871143461 - - PREDICTED: uncharacterized protein At1g66480-like [Populus euphratica]
4 Hb_005726_030 0.0897462431 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
5 Hb_061590_010 0.0898940125 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
6 Hb_187247_010 0.0923349077 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
7 Hb_007437_010 0.0926758335 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_008953_010 0.0941343478 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
9 Hb_007337_010 0.0958997865 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
10 Hb_000203_240 0.0960034767 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
11 Hb_006415_020 0.0960063749 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
12 Hb_143766_040 0.0964348116 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
13 Hb_032717_030 0.0966942679 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
14 Hb_003073_020 0.0967613232 - - protein binding protein, putative [Ricinus communis]
15 Hb_038238_010 0.0968617207 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
16 Hb_004981_020 0.0975655528 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
17 Hb_106528_020 0.0984896474 - - Cationic peroxidase 2 precursor [Theobroma cacao]
18 Hb_002249_180 0.1008652233 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
19 Hb_004190_030 0.1015926462 - - unnamed protein product [Vitis vinifera]
20 Hb_039363_010 0.1029248414 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]

Gene co-expression network

sample Hb_081224_010 Hb_081224_010 Hb_000828_030 Hb_000828_030 Hb_081224_010--Hb_000828_030 Hb_005433_050 Hb_005433_050 Hb_081224_010--Hb_005433_050 Hb_005726_030 Hb_005726_030 Hb_081224_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_081224_010--Hb_061590_010 Hb_187247_010 Hb_187247_010 Hb_081224_010--Hb_187247_010 Hb_007437_010 Hb_007437_010 Hb_081224_010--Hb_007437_010 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_000203_240 Hb_000203_240 Hb_005433_050--Hb_000203_240 Hb_005433_050--Hb_106528_020 Hb_005433_050--Hb_010358_010 Hb_000563_060 Hb_000563_060 Hb_005433_050--Hb_000563_060 Hb_002944_020 Hb_002944_020 Hb_005433_050--Hb_002944_020 Hb_000229_080 Hb_000229_080 Hb_005433_050--Hb_000229_080 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_007337_010 Hb_007337_010 Hb_005726_030--Hb_007337_010 Hb_143766_040 Hb_143766_040 Hb_005726_030--Hb_143766_040 Hb_004981_020 Hb_004981_020 Hb_005726_030--Hb_004981_020 Hb_005726_030--Hb_007437_010 Hb_061590_010--Hb_187247_010 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_061590_010--Hb_007437_010 Hb_187247_010--Hb_007337_010 Hb_187247_010--Hb_143766_040 Hb_187247_010--Hb_004981_020 Hb_187247_010--Hb_106528_020 Hb_006415_020 Hb_006415_020 Hb_007437_010--Hb_006415_020 Hb_007437_010--Hb_038238_010 Hb_007437_010--Hb_187247_010 Hb_007437_010--Hb_106528_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.87175 0 0 0.078394 0.242512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 44.98 0.416564

CAGE analysis