Hb_008953_010

Information

Type -
Description -
Location Contig8953: 3157-3844
Sequence    

Annotation

kegg
ID pda:103695918
description serine/threonine-protein kinase PBS1-like
nr
ID XP_010320603.1
description PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
swissprot
ID Q9FFW5
description Proline-rich receptor-like protein kinase PERK8 OS=Arabidopsis thaliana GN=PERK8 PE=1 SV=1
trembl
ID A0A0C9S6I8
description TSA: Wollemia nobilis Ref_Wollemi_Transcript_14780_2565 transcribed RNA sequence OS=Wollemia nobilis PE=4 SV=1
Gene Ontology
ID GO:0016772
description prolin-rich extensin-like receptor protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008953_010 0.0 - - PREDICTED: serine/threonine-protein kinase PBS1 isoform X2 [Solanum lycopersicum]
2 Hb_000375_040 0.0273201125 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 308-like [Populus euphratica]
3 Hb_043903_010 0.0494422722 - - PREDICTED: protein kinase 2B, chloroplastic-like [Tarenaya hassleriana]
4 Hb_000828_030 0.0940355202 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
5 Hb_081224_010 0.0941343478 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
6 Hb_005726_030 0.1027677167 - - hypothetical protein CISIN_1g020511mg [Citrus sinensis]
7 Hb_061590_010 0.102961111 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
8 Hb_007437_010 0.1035987118 - - Polygalacturonase precursor, putative [Ricinus communis]
9 Hb_187247_010 0.1057191907 - - PREDICTED: cytochrome P450 86B1-like [Jatropha curcas]
10 Hb_006415_020 0.1060851544 - - PREDICTED: nucleobase-ascorbate transporter 4-like [Jatropha curcas]
11 Hb_038238_010 0.1080570241 - - hypothetical protein POPTR_0001s30980g [Populus trichocarpa]
12 Hb_007337_010 0.1093687274 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]
13 Hb_143766_040 0.1099026364 - - PREDICTED: probable caffeoyl-CoA O-methyltransferase At4g26220 [Jatropha curcas]
14 Hb_106528_020 0.110368441 - - Cationic peroxidase 2 precursor [Theobroma cacao]
15 Hb_004981_020 0.1110239066 - - PREDICTED: uncharacterized protein LOC103706119 [Phoenix dactylifera]
16 Hb_001140_330 0.120136163 - - PREDICTED: uncharacterized protein LOC105142675 [Populus euphratica]
17 Hb_010358_010 0.1205466649 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
18 Hb_000692_270 0.1228472494 - - PREDICTED: ornithine decarboxylase-like [Jatropha curcas]
19 Hb_004190_030 0.1237475859 - - unnamed protein product [Vitis vinifera]
20 Hb_153208_010 0.1244244443 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_008953_010 Hb_008953_010 Hb_000375_040 Hb_000375_040 Hb_008953_010--Hb_000375_040 Hb_043903_010 Hb_043903_010 Hb_008953_010--Hb_043903_010 Hb_000828_030 Hb_000828_030 Hb_008953_010--Hb_000828_030 Hb_081224_010 Hb_081224_010 Hb_008953_010--Hb_081224_010 Hb_005726_030 Hb_005726_030 Hb_008953_010--Hb_005726_030 Hb_061590_010 Hb_061590_010 Hb_008953_010--Hb_061590_010 Hb_000375_040--Hb_043903_010 Hb_000375_040--Hb_000828_030 Hb_000375_040--Hb_081224_010 Hb_187247_010 Hb_187247_010 Hb_000375_040--Hb_187247_010 Hb_000375_040--Hb_061590_010 Hb_043903_010--Hb_000828_030 Hb_004981_020 Hb_004981_020 Hb_043903_010--Hb_004981_020 Hb_143766_040 Hb_143766_040 Hb_043903_010--Hb_143766_040 Hb_007337_010 Hb_007337_010 Hb_043903_010--Hb_007337_010 Hb_020141_020 Hb_020141_020 Hb_000828_030--Hb_020141_020 Hb_010358_010 Hb_010358_010 Hb_000828_030--Hb_010358_010 Hb_106528_020 Hb_106528_020 Hb_000828_030--Hb_106528_020 Hb_153208_010 Hb_153208_010 Hb_000828_030--Hb_153208_010 Hb_005433_050 Hb_005433_050 Hb_000828_030--Hb_005433_050 Hb_038238_010 Hb_038238_010 Hb_000828_030--Hb_038238_010 Hb_081224_010--Hb_000828_030 Hb_081224_010--Hb_005433_050 Hb_081224_010--Hb_005726_030 Hb_081224_010--Hb_061590_010 Hb_081224_010--Hb_187247_010 Hb_007437_010 Hb_007437_010 Hb_081224_010--Hb_007437_010 Hb_005726_030--Hb_061590_010 Hb_005726_030--Hb_187247_010 Hb_005726_030--Hb_007337_010 Hb_005726_030--Hb_143766_040 Hb_005726_030--Hb_004981_020 Hb_005726_030--Hb_007437_010 Hb_061590_010--Hb_187247_010 Hb_061590_010--Hb_007337_010 Hb_061590_010--Hb_143766_040 Hb_061590_010--Hb_004981_020 Hb_061590_010--Hb_007437_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.514539 0 0 0 0.621064
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 29.1245 0

CAGE analysis