Hb_000786_030

Information

Type -
Description -
Location Contig786: 37366-39556
Sequence    

Annotation

kegg
ID cmo:103496240
description uncharacterized LOC103496240
nr
ID XP_009793870.1
description PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A5BKJ7
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_018924 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000786_030 0.0 - - PREDICTED: uncharacterized protein LOC104240691 [Nicotiana sylvestris]
2 Hb_000672_020 0.1894395555 - - Peptidoglycan-binding LysM domain-containing protein, putative isoform 3 [Theobroma cacao]
3 Hb_003030_030 0.20447571 - - -
4 Hb_002422_070 0.208960431 - - PREDICTED: putative protein TPRXL [Malus domestica]
5 Hb_027760_020 0.2105890119 - - hypothetical protein M569_04462, partial [Genlisea aurea]
6 Hb_000656_090 0.2151522655 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
7 Hb_003352_040 0.2175782981 - - PREDICTED: 26S proteasome regulatory subunit RPN13 [Jatropha curcas]
8 Hb_000983_040 0.2249241963 - - PREDICTED: transmembrane protein 136 [Jatropha curcas]
9 Hb_000223_170 0.2257699229 - - -
10 Hb_158163_010 0.2259813928 - - protein binding protein, putative [Ricinus communis]
11 Hb_036988_010 0.2277268774 - - hypothetical protein JCGZ_25496 [Jatropha curcas]
12 Hb_001799_200 0.2292781518 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
13 Hb_000369_120 0.2295674918 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
14 Hb_001953_080 0.2300273522 - - pseudouridine synthase family protein, partial [Manihot esculenta]
15 Hb_011537_110 0.2358418057 - - hypothetical protein PRUPE_ppa013160mg [Prunus persica]
16 Hb_002200_040 0.236472145 - - PREDICTED: uncharacterized protein LOC105629143 isoform X1 [Jatropha curcas]
17 Hb_006442_020 0.2378404608 - - PREDICTED: very-long-chain enoyl-CoA reductase [Jatropha curcas]
18 Hb_000617_200 0.2381032137 - - f-actin capping protein alpha, putative [Ricinus communis]
19 Hb_000337_050 0.239208056 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
20 Hb_003086_080 0.2426357629 - - PREDICTED: uncharacterized protein LOC105635783 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000786_030 Hb_000786_030 Hb_000672_020 Hb_000672_020 Hb_000786_030--Hb_000672_020 Hb_003030_030 Hb_003030_030 Hb_000786_030--Hb_003030_030 Hb_002422_070 Hb_002422_070 Hb_000786_030--Hb_002422_070 Hb_027760_020 Hb_027760_020 Hb_000786_030--Hb_027760_020 Hb_000656_090 Hb_000656_090 Hb_000786_030--Hb_000656_090 Hb_003352_040 Hb_003352_040 Hb_000786_030--Hb_003352_040 Hb_000672_020--Hb_003352_040 Hb_011537_110 Hb_011537_110 Hb_000672_020--Hb_011537_110 Hb_001504_080 Hb_001504_080 Hb_000672_020--Hb_001504_080 Hb_000672_020--Hb_002422_070 Hb_012794_010 Hb_012794_010 Hb_000672_020--Hb_012794_010 Hb_012653_040 Hb_012653_040 Hb_000672_020--Hb_012653_040 Hb_003030_030--Hb_000656_090 Hb_003141_070 Hb_003141_070 Hb_003030_030--Hb_003141_070 Hb_004445_020 Hb_004445_020 Hb_003030_030--Hb_004445_020 Hb_000105_120 Hb_000105_120 Hb_003030_030--Hb_000105_120 Hb_015978_110 Hb_015978_110 Hb_003030_030--Hb_015978_110 Hb_003606_060 Hb_003606_060 Hb_003030_030--Hb_003606_060 Hb_006277_110 Hb_006277_110 Hb_002422_070--Hb_006277_110 Hb_002422_070--Hb_012794_010 Hb_000300_290 Hb_000300_290 Hb_002422_070--Hb_000300_290 Hb_005092_060 Hb_005092_060 Hb_002422_070--Hb_005092_060 Hb_000260_810 Hb_000260_810 Hb_002422_070--Hb_000260_810 Hb_000346_040 Hb_000346_040 Hb_002422_070--Hb_000346_040 Hb_000369_120 Hb_000369_120 Hb_027760_020--Hb_000369_120 Hb_008642_030 Hb_008642_030 Hb_027760_020--Hb_008642_030 Hb_005167_030 Hb_005167_030 Hb_027760_020--Hb_005167_030 Hb_002154_110 Hb_002154_110 Hb_027760_020--Hb_002154_110 Hb_000016_170 Hb_000016_170 Hb_027760_020--Hb_000016_170 Hb_005694_020 Hb_005694_020 Hb_027760_020--Hb_005694_020 Hb_008447_030 Hb_008447_030 Hb_000656_090--Hb_008447_030 Hb_012627_020 Hb_012627_020 Hb_000656_090--Hb_012627_020 Hb_000160_160 Hb_000160_160 Hb_000656_090--Hb_000160_160 Hb_008447_040 Hb_008447_040 Hb_000656_090--Hb_008447_040 Hb_026745_020 Hb_026745_020 Hb_000656_090--Hb_026745_020 Hb_000083_170 Hb_000083_170 Hb_003352_040--Hb_000083_170 Hb_037887_010 Hb_037887_010 Hb_003352_040--Hb_037887_010 Hb_002259_160 Hb_002259_160 Hb_003352_040--Hb_002259_160 Hb_012675_070 Hb_012675_070 Hb_003352_040--Hb_012675_070 Hb_001268_050 Hb_001268_050 Hb_003352_040--Hb_001268_050 Hb_003352_040--Hb_001504_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0125161 0 0.00789372 0.0305067 0 0.0379999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0229373 0.0180476 0.0342104 0.0143623 0.0381247

CAGE analysis