Hb_003362_050

Information

Type -
Description -
Location Contig3362: 46655-53598
Sequence    

Annotation

kegg
ID tcc:TCM_020273
description Sucrose phosphate synthase 3F isoform 1
nr
ID XP_012071108.1
description PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
swissprot
ID Q8RY24
description Probable sucrose-phosphate synthase 3 OS=Arabidopsis thaliana GN=SPS3 PE=2 SV=1
trembl
ID A0A067KT05
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01103 PE=4 SV=1
Gene Ontology
ID GO:0046524
description probable sucrose-phosphate synthase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35207: 47190-53231
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003362_050 0.0 - - PREDICTED: probable sucrose-phosphate synthase 3 [Jatropha curcas]
2 Hb_002027_420 0.1054439341 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]
3 Hb_001135_190 0.1166942365 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
4 Hb_000992_090 0.1192130494 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
5 Hb_000103_240 0.120055366 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 [Jatropha curcas]
6 Hb_001083_040 0.1268886182 - - hypothetical protein EUGRSUZ_E00717 [Eucalyptus grandis]
7 Hb_000029_390 0.1316076874 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
8 Hb_001951_040 0.1327160131 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
9 Hb_004542_030 0.1331526286 - - hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
10 Hb_001135_170 0.1361095293 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
11 Hb_011689_070 0.1369444614 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
12 Hb_000156_240 0.1382062664 - - hypothetical protein MPER_07741 [Moniliophthora perniciosa FA553]
13 Hb_000282_100 0.138234016 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
14 Hb_007122_010 0.1385064383 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
15 Hb_161881_010 0.1424654659 - - laccase, putative [Ricinus communis]
16 Hb_000922_110 0.1433128632 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
17 Hb_106552_030 0.1455801291 - - hypothetical protein POPTR_0006s23180g [Populus trichocarpa]
18 Hb_001081_050 0.14691589 - - hypothetical protein POPTR_0001s07860g [Populus trichocarpa]
19 Hb_001671_130 0.1481492223 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4-like [Jatropha curcas]
20 Hb_000349_150 0.1490936514 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]

Gene co-expression network

sample Hb_003362_050 Hb_003362_050 Hb_002027_420 Hb_002027_420 Hb_003362_050--Hb_002027_420 Hb_001135_190 Hb_001135_190 Hb_003362_050--Hb_001135_190 Hb_000992_090 Hb_000992_090 Hb_003362_050--Hb_000992_090 Hb_000103_240 Hb_000103_240 Hb_003362_050--Hb_000103_240 Hb_001083_040 Hb_001083_040 Hb_003362_050--Hb_001083_040 Hb_000029_390 Hb_000029_390 Hb_003362_050--Hb_000029_390 Hb_004542_030 Hb_004542_030 Hb_002027_420--Hb_004542_030 Hb_001951_040 Hb_001951_040 Hb_002027_420--Hb_001951_040 Hb_007122_010 Hb_007122_010 Hb_002027_420--Hb_007122_010 Hb_000156_240 Hb_000156_240 Hb_002027_420--Hb_000156_240 Hb_002027_420--Hb_001135_190 Hb_001135_190--Hb_001951_040 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_000282_100 Hb_000282_100 Hb_001135_190--Hb_000282_100 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_004855_030 Hb_004855_030 Hb_001135_190--Hb_004855_030 Hb_023344_040 Hb_023344_040 Hb_000992_090--Hb_023344_040 Hb_000992_090--Hb_001135_170 Hb_011344_030 Hb_011344_030 Hb_000992_090--Hb_011344_030 Hb_000009_470 Hb_000009_470 Hb_000992_090--Hb_000009_470 Hb_000992_090--Hb_000029_390 Hb_000992_090--Hb_000103_240 Hb_003905_030 Hb_003905_030 Hb_000103_240--Hb_003905_030 Hb_000103_240--Hb_023344_040 Hb_000103_240--Hb_001135_170 Hb_106552_030 Hb_106552_030 Hb_000103_240--Hb_106552_030 Hb_028960_010 Hb_028960_010 Hb_000103_240--Hb_028960_010 Hb_001083_040--Hb_000156_240 Hb_103465_010 Hb_103465_010 Hb_001083_040--Hb_103465_010 Hb_001083_040--Hb_004542_030 Hb_001083_040--Hb_001135_190 Hb_185274_020 Hb_185274_020 Hb_001083_040--Hb_185274_020 Hb_001674_050 Hb_001674_050 Hb_001083_040--Hb_001674_050 Hb_004920_080 Hb_004920_080 Hb_000029_390--Hb_004920_080 Hb_002995_060 Hb_002995_060 Hb_000029_390--Hb_002995_060 Hb_000029_390--Hb_000282_100 Hb_009093_020 Hb_009093_020 Hb_000029_390--Hb_009093_020 Hb_001517_060 Hb_001517_060 Hb_000029_390--Hb_001517_060 Hb_004631_020 Hb_004631_020 Hb_000029_390--Hb_004631_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0271408 2.29025 9.55754 1.84288 0.00928204 0.0925302
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.43825 0.35373 1.10349 0.483431 61.7872

CAGE analysis