Hb_001951_040

Information

Type -
Description -
Location Contig1951: 26082-39375
Sequence    

Annotation

kegg
ID rcu:RCOM_0633900
description starch synthase, putative (EC:2.4.1.21)
nr
ID XP_012072081.1
description PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
swissprot
ID Q0WVX5
description Probable starch synthase 4, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
trembl
ID A0A067KNY8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04589 PE=3 SV=1
Gene Ontology
ID GO:0004373
description probable starch synthase chloroplastic amyloplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19470: 26688-29095 , PASA_asmbl_19471: 30387-39159
cDNA
(Sanger)
(ID:Location)		 006_G17.ab1: 26104-26877 , 019_B24.ab1: 26806-26923 , 021_M13.ab1: 26201-26920 , 026_P04.ab1: 26500-26920 , 049_F01r.ab1: 29123-29780

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001951_040 0.0 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
2 Hb_005736_030 0.0686111935 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
3 Hb_001135_190 0.0755299933 transcription factor TF Family: Orphans Pseudo response regulator isoform 11 [Theobroma cacao]
4 Hb_020805_090 0.0776054358 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
5 Hb_004631_020 0.0816586776 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Jatropha curcas]
6 Hb_007122_010 0.0817575491 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
7 Hb_004855_030 0.0829780624 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
8 Hb_000282_100 0.0835331495 - - PREDICTED: glycine dehydrogenase (decarboxylating), mitochondrial [Jatropha curcas]
9 Hb_001135_170 0.0885569135 transcription factor TF Family: Orphans Two-component response regulator ARR2, putative [Ricinus communis]
10 Hb_000992_090 0.0900770103 transcription factor TF Family: Orphans CIL, putative [Ricinus communis]
11 Hb_000029_390 0.093122684 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_004920_080 0.0937295642 - - PREDICTED: calvin cycle protein CP12-2, chloroplastic-like [Jatropha curcas]
13 Hb_004712_230 0.0942418628 - - PREDICTED: retrotransposon-like protein 1 [Jatropha curcas]
14 Hb_068804_110 0.096684801 - - PREDICTED: serine hydroxymethyltransferase, mitochondrial [Jatropha curcas]
15 Hb_000349_150 0.0967770172 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
16 Hb_001289_050 0.0975381135 - - hypothetical protein Poptr_cp075 [Populus trichocarpa]
17 Hb_000029_150 0.0979412662 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004807_040 0.0984597592 - - PREDICTED: uncharacterized protein LOC104420559 [Eucalyptus grandis]
19 Hb_000832_050 0.0987962206 - - ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Marila laxiflora]
20 Hb_002027_420 0.0994127006 - - hypothetical protein POPTR_0020s00240g [Populus trichocarpa]

Gene co-expression network

sample Hb_001951_040 Hb_001951_040 Hb_005736_030 Hb_005736_030 Hb_001951_040--Hb_005736_030 Hb_001135_190 Hb_001135_190 Hb_001951_040--Hb_001135_190 Hb_020805_090 Hb_020805_090 Hb_001951_040--Hb_020805_090 Hb_004631_020 Hb_004631_020 Hb_001951_040--Hb_004631_020 Hb_007122_010 Hb_007122_010 Hb_001951_040--Hb_007122_010 Hb_004855_030 Hb_004855_030 Hb_001951_040--Hb_004855_030 Hb_000029_150 Hb_000029_150 Hb_005736_030--Hb_000029_150 Hb_005736_030--Hb_020805_090 Hb_004712_230 Hb_004712_230 Hb_005736_030--Hb_004712_230 Hb_000629_110 Hb_000629_110 Hb_005736_030--Hb_000629_110 Hb_005736_030--Hb_004631_020 Hb_004807_040 Hb_004807_040 Hb_005736_030--Hb_004807_040 Hb_001135_170 Hb_001135_170 Hb_001135_190--Hb_001135_170 Hb_000282_100 Hb_000282_100 Hb_001135_190--Hb_000282_100 Hb_000029_390 Hb_000029_390 Hb_001135_190--Hb_000029_390 Hb_000349_150 Hb_000349_150 Hb_001135_190--Hb_000349_150 Hb_001135_190--Hb_004855_030 Hb_020805_090--Hb_004855_030 Hb_020805_090--Hb_000349_150 Hb_003208_010 Hb_003208_010 Hb_020805_090--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_020805_090--Hb_000977_260 Hb_011689_070 Hb_011689_070 Hb_020805_090--Hb_011689_070 Hb_003251_010 Hb_003251_010 Hb_020805_090--Hb_003251_010 Hb_004631_020--Hb_004712_230 Hb_000841_040 Hb_000841_040 Hb_004631_020--Hb_000841_040 Hb_003090_050 Hb_003090_050 Hb_004631_020--Hb_003090_050 Hb_004631_020--Hb_001135_170 Hb_032631_060 Hb_032631_060 Hb_004631_020--Hb_032631_060 Hb_007122_010--Hb_000282_100 Hb_007122_010--Hb_004712_230 Hb_001289_050 Hb_001289_050 Hb_007122_010--Hb_001289_050 Hb_007122_010--Hb_000029_390 Hb_007122_010--Hb_004631_020 Hb_004855_030--Hb_000349_150 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.929528 6.87861 159.146 79.5471 1.17342 1.19692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.11809 2.60414 3.78578 7.5494 953.525

CAGE analysis