Hb_000186_110

Information

Type -
Description -
Location Contig186: 198302-199485
Sequence    

Annotation

kegg
ID cic:CICLE_v10015934mg
description hypothetical protein
nr
ID KDO78379.1
description hypothetical protein CISIN_1g020639mg [Citrus sinensis]
swissprot
ID Q9ZWQ8
description Plastid-lipid-associated protein, chloroplastic OS=Citrus unshiu GN=PAP PE=2 SV=1
trembl
ID A0A067GFH7
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020639mg PE=4 SV=1
Gene Ontology
ID GO:0009536
description plastid-lipid-associated chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000186_110 0.0 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
2 Hb_000118_090 0.152892987 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
3 Hb_000062_480 0.1630347538 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
4 Hb_071126_010 0.1661681034 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
5 Hb_000130_330 0.1665055115 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
6 Hb_000175_640 0.1682906951 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
7 Hb_004611_040 0.1757513232 - - PREDICTED: RNA polymerase sigma factor sigD, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_011649_010 0.1772799731 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
9 Hb_001907_080 0.1809234295 - - PREDICTED: uncharacterized protein LOC105628749 [Jatropha curcas]
10 Hb_005488_190 0.1877934477 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
11 Hb_000193_220 0.19304275 - - PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic [Jatropha curcas]
12 Hb_010721_020 0.1953658526 - - PREDICTED: photosynthetic NDH subunit of lumenal location 4, chloroplastic [Jatropha curcas]
13 Hb_007803_040 0.1960364159 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
14 Hb_072212_010 0.1977451101 - - hypothetical chloroplast RF1 [Ficus sp. M. J. Moore 315]
15 Hb_046157_010 0.2008337154 - - PREDICTED: mitogen-activated protein kinase kinase kinase 2-like [Jatropha curcas]
16 Hb_007317_170 0.2018737857 - - PREDICTED: protein FANTASTIC FOUR 1 [Jatropha curcas]
17 Hb_000340_270 0.2019834524 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
18 Hb_027298_020 0.2021130523 - - hypothetical protein POPTR_0005s05760g [Populus trichocarpa]
19 Hb_003861_150 0.202456225 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
20 Hb_004117_150 0.202776924 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]

Gene co-expression network

sample Hb_000186_110 Hb_000186_110 Hb_000118_090 Hb_000118_090 Hb_000186_110--Hb_000118_090 Hb_000062_480 Hb_000062_480 Hb_000186_110--Hb_000062_480 Hb_071126_010 Hb_071126_010 Hb_000186_110--Hb_071126_010 Hb_000130_330 Hb_000130_330 Hb_000186_110--Hb_000130_330 Hb_000175_640 Hb_000175_640 Hb_000186_110--Hb_000175_640 Hb_004611_040 Hb_004611_040 Hb_000186_110--Hb_004611_040 Hb_010721_020 Hb_010721_020 Hb_000118_090--Hb_010721_020 Hb_011649_010 Hb_011649_010 Hb_000118_090--Hb_011649_010 Hb_000193_220 Hb_000193_220 Hb_000118_090--Hb_000193_220 Hb_000045_050 Hb_000045_050 Hb_000118_090--Hb_000045_050 Hb_071079_020 Hb_071079_020 Hb_000118_090--Hb_071079_020 Hb_000544_080 Hb_000544_080 Hb_000118_090--Hb_000544_080 Hb_006681_020 Hb_006681_020 Hb_000062_480--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_000062_480--Hb_005488_190 Hb_000768_120 Hb_000768_120 Hb_000062_480--Hb_000768_120 Hb_007803_040 Hb_007803_040 Hb_000062_480--Hb_007803_040 Hb_004117_150 Hb_004117_150 Hb_000062_480--Hb_004117_150 Hb_004208_090 Hb_004208_090 Hb_000062_480--Hb_004208_090 Hb_017043_030 Hb_017043_030 Hb_071126_010--Hb_017043_030 Hb_003861_150 Hb_003861_150 Hb_071126_010--Hb_003861_150 Hb_071126_010--Hb_011649_010 Hb_072212_010 Hb_072212_010 Hb_071126_010--Hb_072212_010 Hb_071126_010--Hb_000118_090 Hb_001300_130 Hb_001300_130 Hb_000130_330--Hb_001300_130 Hb_000130_330--Hb_004117_150 Hb_000130_330--Hb_000062_480 Hb_027298_020 Hb_027298_020 Hb_000130_330--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_000130_330--Hb_000703_070 Hb_000802_050 Hb_000802_050 Hb_000130_330--Hb_000802_050 Hb_000175_640--Hb_000130_330 Hb_000175_640--Hb_000768_120 Hb_000175_640--Hb_000062_480 Hb_002495_090 Hb_002495_090 Hb_000175_640--Hb_002495_090 Hb_002249_090 Hb_002249_090 Hb_000175_640--Hb_002249_090 Hb_003427_080 Hb_003427_080 Hb_004611_040--Hb_003427_080 Hb_002835_090 Hb_002835_090 Hb_004611_040--Hb_002835_090 Hb_001155_020 Hb_001155_020 Hb_004611_040--Hb_001155_020 Hb_000667_140 Hb_000667_140 Hb_004611_040--Hb_000667_140 Hb_000402_170 Hb_000402_170 Hb_004611_040--Hb_000402_170 Hb_001338_160 Hb_001338_160 Hb_004611_040--Hb_001338_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.28595 0.0622563 3.34504 1.02509 0.975488 0.418276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.111486 0.100481 0.361478 5.68511

CAGE analysis