Hb_000175_640

Information

Type -
Description -
Location Contig175: 477665-480905
Sequence    

Annotation

kegg
ID rcu:RCOM_0804610
description electron carrier, putative
nr
ID XP_012078630.1
description PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
swissprot
ID Q9LU21
description Photosynthetic NDH subunit of subcomplex B 3, chloroplastic OS=Arabidopsis thaliana GN=PNSB3 PE=2 SV=1
trembl
ID A0A067KJ63
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13215 PE=4 SV=1
Gene Ontology
ID GO:0009055
description 2fe-2s ferredoxin-like superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16752: 477614-480815
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000175_640 0.0 - - PREDICTED: photosynthetic NDH subunit of subcomplex B 3, chloroplastic [Jatropha curcas]
2 Hb_000130_330 0.1542052708 transcription factor TF Family: TCP PREDICTED: transcription factor TCP3-like [Jatropha curcas]
3 Hb_000768_120 0.1667973525 - - PREDICTED: RNA polymerase sigma factor sigB [Jatropha curcas]
4 Hb_000062_480 0.1675431706 - - PREDICTED: 4-coumarate--CoA ligase-like 9 isoform X1 [Jatropha curcas]
5 Hb_000186_110 0.1682906951 - - hypothetical protein CISIN_1g020639mg [Citrus sinensis]
6 Hb_002495_090 0.1690538463 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH48 isoform X2 [Jatropha curcas]
7 Hb_002249_090 0.1703912783 - - PREDICTED: magnesium protoporphyrin IX methyltransferase, chloroplastic [Jatropha curcas]
8 Hb_000174_080 0.1757093865 - - 4-nitrophenylphosphatase, putative [Ricinus communis]
9 Hb_003602_100 0.1765437784 - - Glutamyl-tRNA reductase 1, chloroplast precursor, putative [Ricinus communis]
10 Hb_006681_020 0.1769377594 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic [Jatropha curcas]
11 Hb_011519_050 0.177895158 - - hypothetical protein POPTR_0015s04810g [Populus trichocarpa]
12 Hb_137216_010 0.1782027441 - - PREDICTED: unknown protein DS12 from 2D-PAGE of leaf, chloroplastic-like isoform X2 [Citrus sinensis]
13 Hb_000393_040 0.1816612826 - - PREDICTED: uncharacterized protein LOC105128208 [Populus euphratica]
14 Hb_000009_510 0.18170101 - - PREDICTED: uncharacterized protein LOC105126496 [Populus euphratica]
15 Hb_007803_040 0.1860196657 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic [Jatropha curcas]
16 Hb_058620_080 0.1865612632 - - PREDICTED: phosphoglycerate kinase, chloroplastic [Jatropha curcas]
17 Hb_005015_100 0.1867414905 - - PREDICTED: uncharacterized protein LOC105636541 isoform X1 [Jatropha curcas]
18 Hb_002235_070 0.1875334921 - - PREDICTED: uncharacterized protein LOC105644108 [Jatropha curcas]
19 Hb_177281_010 0.1896585641 - - PREDICTED: 50S ribosomal protein 5, chloroplastic-like [Citrus sinensis]
20 Hb_004117_150 0.1914345734 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]

Gene co-expression network

sample Hb_000175_640 Hb_000175_640 Hb_000130_330 Hb_000130_330 Hb_000175_640--Hb_000130_330 Hb_000768_120 Hb_000768_120 Hb_000175_640--Hb_000768_120 Hb_000062_480 Hb_000062_480 Hb_000175_640--Hb_000062_480 Hb_000186_110 Hb_000186_110 Hb_000175_640--Hb_000186_110 Hb_002495_090 Hb_002495_090 Hb_000175_640--Hb_002495_090 Hb_002249_090 Hb_002249_090 Hb_000175_640--Hb_002249_090 Hb_001300_130 Hb_001300_130 Hb_000130_330--Hb_001300_130 Hb_004117_150 Hb_004117_150 Hb_000130_330--Hb_004117_150 Hb_000130_330--Hb_000062_480 Hb_027298_020 Hb_027298_020 Hb_000130_330--Hb_027298_020 Hb_000703_070 Hb_000703_070 Hb_000130_330--Hb_000703_070 Hb_000802_050 Hb_000802_050 Hb_000130_330--Hb_000802_050 Hb_006681_020 Hb_006681_020 Hb_000768_120--Hb_006681_020 Hb_004855_070 Hb_004855_070 Hb_000768_120--Hb_004855_070 Hb_007479_010 Hb_007479_010 Hb_000768_120--Hb_007479_010 Hb_000768_120--Hb_002495_090 Hb_004208_090 Hb_004208_090 Hb_000768_120--Hb_004208_090 Hb_001999_260 Hb_001999_260 Hb_000768_120--Hb_001999_260 Hb_000062_480--Hb_006681_020 Hb_005488_190 Hb_005488_190 Hb_000062_480--Hb_005488_190 Hb_000062_480--Hb_000768_120 Hb_007803_040 Hb_007803_040 Hb_000062_480--Hb_007803_040 Hb_000062_480--Hb_004117_150 Hb_000062_480--Hb_004208_090 Hb_000118_090 Hb_000118_090 Hb_000186_110--Hb_000118_090 Hb_000186_110--Hb_000062_480 Hb_071126_010 Hb_071126_010 Hb_000186_110--Hb_071126_010 Hb_000186_110--Hb_000130_330 Hb_004611_040 Hb_004611_040 Hb_000186_110--Hb_004611_040 Hb_137216_010 Hb_137216_010 Hb_002495_090--Hb_137216_010 Hb_000134_040 Hb_000134_040 Hb_002495_090--Hb_000134_040 Hb_002495_090--Hb_007479_010 Hb_002495_090--Hb_006681_020 Hb_002495_090--Hb_005488_190 Hb_003602_100 Hb_003602_100 Hb_002249_090--Hb_003602_100 Hb_000174_080 Hb_000174_080 Hb_002249_090--Hb_000174_080 Hb_002609_140 Hb_002609_140 Hb_002249_090--Hb_002609_140 Hb_000544_070 Hb_000544_070 Hb_002249_090--Hb_000544_070 Hb_000648_070 Hb_000648_070 Hb_002249_090--Hb_000648_070 Hb_107647_010 Hb_107647_010 Hb_002249_090--Hb_107647_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17316 1.43489 89.8767 16.8271 17.982 1.93859
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.82423 2.92384 1.39325 0.670575 104.78

CAGE analysis