Hb_185274_030

Information

Type -
Description -
Location Contig185274: 3316-4305
Sequence    

Annotation

kegg
ID rcu:RCOM_1654620
description hypothetical protein
nr
ID KDP30741.1
description hypothetical protein JCGZ_15170 [Jatropha curcas]
swissprot
ID P08973
description Protein Ycf2 OS=Spinacia oleracea GN=ycf2-A PE=3 SV=2
trembl
ID A0A067K3G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15170 PE=4 SV=1
Gene Ontology
ID GO:0005739
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18135: 1883-2346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_185274_030 0.0 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
2 Hb_001338_070 0.1595704146 - - ORF126 [Jatropha curcas]
3 Hb_000189_400 0.1677317099 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
4 Hb_007504_040 0.1715760356 - - hypothetical chloroplast RF2 [Fragaria iinumae]
5 Hb_007253_030 0.1725487718 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
6 Hb_008887_030 0.176356952 - - PREDICTED: uncharacterized protein LOC105650448 [Jatropha curcas]
7 Hb_005433_020 0.1848766471 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
8 Hb_000227_260 0.1859888992 - - PREDICTED: RAN GTPase-activating protein 2 [Jatropha curcas]
9 Hb_107373_010 0.186643997 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
10 Hb_003055_030 0.187629791 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
11 Hb_011930_060 0.1915272734 - - nitrate transporter, putative [Ricinus communis]
12 Hb_033312_120 0.1921894022 - - PREDICTED: psbQ-like protein 3, chloroplastic [Jatropha curcas]
13 Hb_000834_170 0.1950093798 - - polygalacturonase, putative [Ricinus communis]
14 Hb_001338_130 0.1994955817 - - hypothetical protein MTR_4g129340 [Medicago truncatula]
15 Hb_005977_040 0.2024498031 - - Photosystem I reaction center subunit IV A [Medicago truncatula]
16 Hb_006106_010 0.2030113889 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
17 Hb_003373_050 0.2057232597 - - receptor protein kinase zmpk1, putative [Ricinus communis]
18 Hb_000482_160 0.2063560181 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
19 Hb_002025_220 0.2087467778 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
20 Hb_000334_010 0.2097253684 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]

Gene co-expression network

sample Hb_185274_030 Hb_185274_030 Hb_001338_070 Hb_001338_070 Hb_185274_030--Hb_001338_070 Hb_000189_400 Hb_000189_400 Hb_185274_030--Hb_000189_400 Hb_007504_040 Hb_007504_040 Hb_185274_030--Hb_007504_040 Hb_007253_030 Hb_007253_030 Hb_185274_030--Hb_007253_030 Hb_008887_030 Hb_008887_030 Hb_185274_030--Hb_008887_030 Hb_005433_020 Hb_005433_020 Hb_185274_030--Hb_005433_020 Hb_180985_010 Hb_180985_010 Hb_001338_070--Hb_180985_010 Hb_000482_160 Hb_000482_160 Hb_001338_070--Hb_000482_160 Hb_002027_100 Hb_002027_100 Hb_001338_070--Hb_002027_100 Hb_001916_110 Hb_001916_110 Hb_001338_070--Hb_001916_110 Hb_005305_140 Hb_005305_140 Hb_001338_070--Hb_005305_140 Hb_046615_030 Hb_046615_030 Hb_000189_400--Hb_046615_030 Hb_001338_130 Hb_001338_130 Hb_000189_400--Hb_001338_130 Hb_107373_010 Hb_107373_010 Hb_000189_400--Hb_107373_010 Hb_020805_050 Hb_020805_050 Hb_000189_400--Hb_020805_050 Hb_003921_010 Hb_003921_010 Hb_000189_400--Hb_003921_010 Hb_000189_400--Hb_180985_010 Hb_005399_050 Hb_005399_050 Hb_007504_040--Hb_005399_050 Hb_001338_160 Hb_001338_160 Hb_007504_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_007504_040--Hb_005399_040 Hb_107647_010 Hb_107647_010 Hb_007504_040--Hb_107647_010 Hb_001155_020 Hb_001155_020 Hb_007504_040--Hb_001155_020 Hb_002799_060 Hb_002799_060 Hb_007253_030--Hb_002799_060 Hb_001257_110 Hb_001257_110 Hb_007253_030--Hb_001257_110 Hb_000227_260 Hb_000227_260 Hb_007253_030--Hb_000227_260 Hb_001691_170 Hb_001691_170 Hb_007253_030--Hb_001691_170 Hb_005977_040 Hb_005977_040 Hb_007253_030--Hb_005977_040 Hb_003299_060 Hb_003299_060 Hb_007253_030--Hb_003299_060 Hb_001953_110 Hb_001953_110 Hb_008887_030--Hb_001953_110 Hb_001040_090 Hb_001040_090 Hb_008887_030--Hb_001040_090 Hb_131719_010 Hb_131719_010 Hb_008887_030--Hb_131719_010 Hb_033312_120 Hb_033312_120 Hb_008887_030--Hb_033312_120 Hb_023904_010 Hb_023904_010 Hb_008887_030--Hb_023904_010 Hb_003373_050 Hb_003373_050 Hb_005433_020--Hb_003373_050 Hb_004306_090 Hb_004306_090 Hb_005433_020--Hb_004306_090 Hb_000460_040 Hb_000460_040 Hb_005433_020--Hb_000460_040 Hb_000088_230 Hb_000088_230 Hb_005433_020--Hb_000088_230 Hb_002010_030 Hb_002010_030 Hb_005433_020--Hb_002010_030 Hb_002871_180 Hb_002871_180 Hb_005433_020--Hb_002871_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.213902 0.473279 1.82697 0.138079 0.0267842 0.109542
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.24057

CAGE analysis