Hb_007504_040

Information

Type -
Description -
Location Contig7504: 25857-28326
Sequence    

Annotation

kegg
ID csv:3429359
description ycf2, CsCp127; Ycf2
nr
ID YP_009040250.1
description hypothetical chloroplast RF2 [Fragaria iinumae]
swissprot
ID Q14F97
description Protein Ycf2 OS=Populus alba GN=ycf2-A PE=3 SV=1
trembl
ID A0A059PTG8
description Protein Ycf2 OS=Fragaria iinumae GN=ycf2 PE=3 SV=1
Gene Ontology
ID GO:0009507
description hypothetical chloroplast rf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_56834: 27509-27834
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007504_040 0.0 - - hypothetical chloroplast RF2 [Fragaria iinumae]
2 Hb_005399_050 0.1159718381 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
3 Hb_185274_030 0.1715760356 - - hypothetical protein JCGZ_15170 [Jatropha curcas]
4 Hb_001338_160 0.1744986865 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
5 Hb_005399_040 0.1776638648 - - RNA polymerase beta subunit [Hevea brasiliensis]
6 Hb_107647_010 0.1845940202 - - PREDICTED: uncharacterized protein ycf39 [Jatropha curcas]
7 Hb_001155_020 0.1846176829 - - Leucine-rich repeat protein kinase family protein isoform 2 [Theobroma cacao]
8 Hb_003963_040 0.1868626214 - - ATP-dependent Clp protease proteolytic subunit [Hevea brasiliensis]
9 Hb_185274_010 0.1872401944 - - hypothetical protein ARALYDRAFT_330174 [Arabidopsis lyrata subsp. lyrata]
10 Hb_162094_010 0.1874906641 - - RNA polymerase alpha subunit [Hevea brasiliensis]
11 Hb_003861_150 0.1881471945 - - hypothetical protein JCGZ_15167 [Jatropha curcas]
12 Hb_000189_400 0.1904104838 - - hypothetical protein CathTA2_0066 [Caldalkalibacillus thermarum TA2.A1]
13 Hb_000254_120 0.1912848232 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007253_030 0.1917178102 - - PREDICTED: 33 kDa ribonucleoprotein, chloroplastic-like [Populus euphratica]
15 Hb_071126_010 0.1958470811 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002835_090 0.1965716293 - - RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu; Flags: Precursor [Glycine max]
17 Hb_001377_060 0.2011104201 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01030, mitochondrial [Jatropha curcas]
18 Hb_010407_090 0.2016960426 - - PREDICTED: aldo-keto reductase isoform X1 [Jatropha curcas]
19 Hb_107373_010 0.2048884442 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
20 Hb_005977_040 0.2064134443 - - Photosystem I reaction center subunit IV A [Medicago truncatula]

Gene co-expression network

sample Hb_007504_040 Hb_007504_040 Hb_005399_050 Hb_005399_050 Hb_007504_040--Hb_005399_050 Hb_185274_030 Hb_185274_030 Hb_007504_040--Hb_185274_030 Hb_001338_160 Hb_001338_160 Hb_007504_040--Hb_001338_160 Hb_005399_040 Hb_005399_040 Hb_007504_040--Hb_005399_040 Hb_107647_010 Hb_107647_010 Hb_007504_040--Hb_107647_010 Hb_001155_020 Hb_001155_020 Hb_007504_040--Hb_001155_020 Hb_185274_010 Hb_185274_010 Hb_005399_050--Hb_185274_010 Hb_005399_050--Hb_005399_040 Hb_003963_040 Hb_003963_040 Hb_005399_050--Hb_003963_040 Hb_007595_050 Hb_007595_050 Hb_005399_050--Hb_007595_050 Hb_003861_150 Hb_003861_150 Hb_005399_050--Hb_003861_150 Hb_001338_070 Hb_001338_070 Hb_185274_030--Hb_001338_070 Hb_000189_400 Hb_000189_400 Hb_185274_030--Hb_000189_400 Hb_007253_030 Hb_007253_030 Hb_185274_030--Hb_007253_030 Hb_008887_030 Hb_008887_030 Hb_185274_030--Hb_008887_030 Hb_005433_020 Hb_005433_020 Hb_185274_030--Hb_005433_020 Hb_001338_160--Hb_001155_020 Hb_001338_160--Hb_003963_040 Hb_001338_150 Hb_001338_150 Hb_001338_160--Hb_001338_150 Hb_162094_010 Hb_162094_010 Hb_001338_160--Hb_162094_010 Hb_003032_090 Hb_003032_090 Hb_001338_160--Hb_003032_090 Hb_002835_090 Hb_002835_090 Hb_001338_160--Hb_002835_090 Hb_000261_390 Hb_000261_390 Hb_005399_040--Hb_000261_390 Hb_005399_040--Hb_185274_010 Hb_005399_040--Hb_003963_040 Hb_001135_170 Hb_001135_170 Hb_005399_040--Hb_001135_170 Hb_001488_320 Hb_001488_320 Hb_005399_040--Hb_001488_320 Hb_002609_140 Hb_002609_140 Hb_107647_010--Hb_002609_140 Hb_010407_090 Hb_010407_090 Hb_107647_010--Hb_010407_090 Hb_002249_090 Hb_002249_090 Hb_107647_010--Hb_002249_090 Hb_005977_040 Hb_005977_040 Hb_107647_010--Hb_005977_040 Hb_107373_010 Hb_107373_010 Hb_107647_010--Hb_107373_010 Hb_117807_020 Hb_117807_020 Hb_107647_010--Hb_117807_020 Hb_072212_010 Hb_072212_010 Hb_001155_020--Hb_072212_010 Hb_001155_020--Hb_003963_040 Hb_004611_040 Hb_004611_040 Hb_001155_020--Hb_004611_040 Hb_001155_020--Hb_002835_090 Hb_001155_020--Hb_001338_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0894789 0.125732 0.665767 0.0804248 0.0312061 0.139336
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.019427 0 0 1.55626

CAGE analysis