Hb_001775_100

Information

Type -
Description -
Location Contig1775: 95453-98986
Sequence    

Annotation

kegg
ID rcu:RCOM_1180680
description phosphoglycerate mutase, putative (EC:5.4.2.1)
nr
ID XP_012076203.1
description PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
swissprot
ID Q9FNJ9
description Probable 2-carboxy-D-arabinitol-1-phosphatase OS=Arabidopsis thaliana GN=At5g22620 PE=1 SV=1
trembl
ID A0A067KHA5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11261 PE=4 SV=1
Gene Ontology
ID GO:0009507
description probable 2-carboxy-d-arabinitol-1-phosphatase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17040: 95860-98027 , PASA_asmbl_17041: 98155-98746 , PASA_asmbl_17042: 99701-103311
cDNA
(Sanger)
(ID:Location)		 014_L12.ab1: 99885-103311

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001775_100 0.0 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
2 Hb_001257_110 0.0643521239 - - PREDICTED: uncharacterized protein LOC105636396 [Jatropha curcas]
3 Hb_005063_060 0.0667368697 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
4 Hb_001584_210 0.0985597002 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
5 Hb_119600_030 0.1085948101 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
6 Hb_010080_070 0.1097483671 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH, chloroplastic [Jatropha curcas]
7 Hb_003905_030 0.1141265872 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
8 Hb_002003_130 0.1153063629 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
9 Hb_004128_170 0.1157284258 - - hypothetical protein POPTR_0016s08350g [Populus trichocarpa]
10 Hb_005523_040 0.1165591005 - - PREDICTED: uncharacterized protein LOC100253680 [Vitis vinifera]
11 Hb_001517_010 0.1208870716 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000373_160 0.1224600469 - - PREDICTED: fructose-1,6-bisphosphatase, cytosolic [Jatropha curcas]
13 Hb_000679_320 0.1241821108 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105136146 [Populus euphratica]
14 Hb_002814_010 0.1247439441 - - PREDICTED: adenylate kinase 5, chloroplastic [Jatropha curcas]
15 Hb_002701_250 0.1262293676 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
16 Hb_002226_090 0.1268294624 - - Stachyose synthase precursor, putative [Ricinus communis]
17 Hb_000359_160 0.1286939931 - - PREDICTED: protein CAJ1 [Jatropha curcas]
18 Hb_002799_060 0.1297175795 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
19 Hb_001541_280 0.1304766327 - - phosphate transporter [Manihot esculenta]
20 Hb_074548_010 0.1308596639 - - PREDICTED: 28 kDa ribonucleoprotein, chloroplastic isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001775_100 Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_001775_100--Hb_001257_110 Hb_005063_060 Hb_005063_060 Hb_001775_100--Hb_005063_060 Hb_001584_210 Hb_001584_210 Hb_001775_100--Hb_001584_210 Hb_119600_030 Hb_119600_030 Hb_001775_100--Hb_119600_030 Hb_010080_070 Hb_010080_070 Hb_001775_100--Hb_010080_070 Hb_003905_030 Hb_003905_030 Hb_001775_100--Hb_003905_030 Hb_001257_110--Hb_005063_060 Hb_074548_010 Hb_074548_010 Hb_001257_110--Hb_074548_010 Hb_002799_060 Hb_002799_060 Hb_001257_110--Hb_002799_060 Hb_005523_040 Hb_005523_040 Hb_001257_110--Hb_005523_040 Hb_001257_110--Hb_003905_030 Hb_002003_130 Hb_002003_130 Hb_005063_060--Hb_002003_130 Hb_005063_060--Hb_119600_030 Hb_004117_200 Hb_004117_200 Hb_005063_060--Hb_004117_200 Hb_005063_060--Hb_001584_210 Hb_011344_030 Hb_011344_030 Hb_001584_210--Hb_011344_030 Hb_001584_210--Hb_002003_130 Hb_002333_040 Hb_002333_040 Hb_001584_210--Hb_002333_040 Hb_007044_270 Hb_007044_270 Hb_001584_210--Hb_007044_270 Hb_001517_010 Hb_001517_010 Hb_001584_210--Hb_001517_010 Hb_001195_290 Hb_001195_290 Hb_001584_210--Hb_001195_290 Hb_007904_110 Hb_007904_110 Hb_119600_030--Hb_007904_110 Hb_025557_060 Hb_025557_060 Hb_119600_030--Hb_025557_060 Hb_000373_160 Hb_000373_160 Hb_119600_030--Hb_000373_160 Hb_004979_070 Hb_004979_070 Hb_119600_030--Hb_004979_070 Hb_002852_010 Hb_002852_010 Hb_119600_030--Hb_002852_010 Hb_002701_250 Hb_002701_250 Hb_119600_030--Hb_002701_250 Hb_156850_020 Hb_156850_020 Hb_010080_070--Hb_156850_020 Hb_001517_060 Hb_001517_060 Hb_010080_070--Hb_001517_060 Hb_000009_470 Hb_000009_470 Hb_010080_070--Hb_000009_470 Hb_000992_090 Hb_000992_090 Hb_010080_070--Hb_000992_090 Hb_106552_030 Hb_106552_030 Hb_010080_070--Hb_106552_030 Hb_000107_540 Hb_000107_540 Hb_010080_070--Hb_000107_540 Hb_003905_030--Hb_010080_070 Hb_000360_010 Hb_000360_010 Hb_003905_030--Hb_000360_010 Hb_003905_030--Hb_156850_020 Hb_000103_240 Hb_000103_240 Hb_003905_030--Hb_000103_240 Hb_011900_020 Hb_011900_020 Hb_003905_030--Hb_011900_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.41932 7.37749 19.9393 11.9571 0.505281 1.03675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.751139 0.509473 0.423573 0.535783 62.3764

CAGE analysis