Hb_004117_200

Information

Type -
Description -
Location Contig4117: 128652-129215
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14320g
description POPTRDRAFT_750033; zinc finger family protein
nr
ID XP_012091056.1
description PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
swissprot
ID Q9SG96
description RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1
trembl
ID A0A067JGG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00660 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl74

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_200 0.0 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
2 Hb_005063_060 0.1095371425 transcription factor TF Family: GNAT PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
3 Hb_002852_010 0.1269864671 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
4 Hb_021531_010 0.1278110892 - - receptor-kinase, putative [Ricinus communis]
5 Hb_000077_380 0.1304284745 - - PREDICTED: protochlorophyllide reductase [Jatropha curcas]
6 Hb_000460_040 0.133476267 - - PREDICTED: protein phosphatase 2C 57 [Jatropha curcas]
7 Hb_002003_130 0.1388951023 - - hypothetical protein CISIN_1g027843mg [Citrus sinensis]
8 Hb_003373_050 0.1399101258 - - receptor protein kinase zmpk1, putative [Ricinus communis]
9 Hb_005433_020 0.1403219007 - - PREDICTED: multicopper oxidase LPR1 [Jatropha curcas]
10 Hb_119600_030 0.1406490134 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
11 Hb_003494_090 0.1433409008 transcription factor TF Family: MYB myb family transcription factor family protein [Populus trichocarpa]
12 Hb_005054_120 0.1435170724 - - PREDICTED: sedoheptulose-1,7-bisphosphatase, chloroplastic [Jatropha curcas]
13 Hb_002368_060 0.1440401555 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001775_100 0.1442893922 - - PREDICTED: probable 2-carboxy-D-arabinitol-1-phosphatase [Jatropha curcas]
15 Hb_001584_210 0.145970671 - - PREDICTED: chloroplast stem-loop binding protein of 41 kDa b, chloroplastic [Jatropha curcas]
16 Hb_007597_030 0.1459744432 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
17 Hb_000254_130 0.1467965537 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
18 Hb_000544_070 0.1468467794 - - Peptidyl-prolyl cis-trans isomerase FKBP17-2 [Morus notabilis]
19 Hb_029079_010 0.1474449077 - - receptor-kinase, putative [Ricinus communis]
20 Hb_033363_040 0.1477255541 - - PREDICTED: probable galacturonosyltransferase-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_200 Hb_004117_200 Hb_005063_060 Hb_005063_060 Hb_004117_200--Hb_005063_060 Hb_002852_010 Hb_002852_010 Hb_004117_200--Hb_002852_010 Hb_021531_010 Hb_021531_010 Hb_004117_200--Hb_021531_010 Hb_000077_380 Hb_000077_380 Hb_004117_200--Hb_000077_380 Hb_000460_040 Hb_000460_040 Hb_004117_200--Hb_000460_040 Hb_002003_130 Hb_002003_130 Hb_004117_200--Hb_002003_130 Hb_001775_100 Hb_001775_100 Hb_005063_060--Hb_001775_100 Hb_001257_110 Hb_001257_110 Hb_005063_060--Hb_001257_110 Hb_005063_060--Hb_002003_130 Hb_119600_030 Hb_119600_030 Hb_005063_060--Hb_119600_030 Hb_001584_210 Hb_001584_210 Hb_005063_060--Hb_001584_210 Hb_005054_120 Hb_005054_120 Hb_002852_010--Hb_005054_120 Hb_002852_010--Hb_000077_380 Hb_002259_090 Hb_002259_090 Hb_002852_010--Hb_002259_090 Hb_003494_090 Hb_003494_090 Hb_002852_010--Hb_003494_090 Hb_001699_140 Hb_001699_140 Hb_002852_010--Hb_001699_140 Hb_005063_030 Hb_005063_030 Hb_002852_010--Hb_005063_030 Hb_005523_040 Hb_005523_040 Hb_021531_010--Hb_005523_040 Hb_000544_070 Hb_000544_070 Hb_021531_010--Hb_000544_070 Hb_007597_030 Hb_007597_030 Hb_021531_010--Hb_007597_030 Hb_005210_010 Hb_005210_010 Hb_021531_010--Hb_005210_010 Hb_002475_060 Hb_002475_060 Hb_021531_010--Hb_002475_060 Hb_002249_090 Hb_002249_090 Hb_021531_010--Hb_002249_090 Hb_000077_380--Hb_005063_030 Hb_000101_330 Hb_000101_330 Hb_000077_380--Hb_000101_330 Hb_006570_030 Hb_006570_030 Hb_000077_380--Hb_006570_030 Hb_001975_100 Hb_001975_100 Hb_000077_380--Hb_001975_100 Hb_001564_120 Hb_001564_120 Hb_000077_380--Hb_001564_120 Hb_000088_230 Hb_000088_230 Hb_000460_040--Hb_000088_230 Hb_005329_010 Hb_005329_010 Hb_000460_040--Hb_005329_010 Hb_000460_040--Hb_001699_140 Hb_007477_060 Hb_007477_060 Hb_000460_040--Hb_007477_060 Hb_000460_040--Hb_003494_090 Hb_005211_080 Hb_005211_080 Hb_000460_040--Hb_005211_080 Hb_004128_170 Hb_004128_170 Hb_002003_130--Hb_004128_170 Hb_002003_130--Hb_001584_210 Hb_007044_270 Hb_007044_270 Hb_002003_130--Hb_007044_270 Hb_002003_130--Hb_000077_380 Hb_000098_040 Hb_000098_040 Hb_002003_130--Hb_000098_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.121195 1.02605 4.80039 2.48733 0.268556 0.0756013
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.221739 0 0 0 8.67586

CAGE analysis