Hb_055314_010

Information

Type -
Description -
Location Contig55314: 64-829
Sequence    

Annotation

kegg
ID tcc:TCM_003164
description hypothetical protein
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055314_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_181402_010 0.2537748714 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
3 Hb_003127_050 0.2658044078 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_034013_010 0.2799021838 - - hypothetical protein JCGZ_21944 [Jatropha curcas]
5 Hb_000002_090 0.2928460999 - - PREDICTED: RING-H2 finger protein ATL8-like isoform X2 [Jatropha curcas]
6 Hb_000039_120 0.3042185291 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
7 Hb_010055_020 0.3062091263 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
8 Hb_005174_010 0.3075532172 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_000574_090 0.3137776834 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
10 Hb_001999_050 0.3189230458 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
11 Hb_000307_010 0.3206649229 - - PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Jatropha curcas]
12 Hb_004007_210 0.3226680875 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
13 Hb_004604_030 0.3236954317 - - unnamed protein product [Coffea canephora]
14 Hb_002042_060 0.3279366969 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001205_170 0.3291827358 - - PREDICTED: uncharacterized protein LOC105633940 isoform X1 [Jatropha curcas]
16 Hb_004884_210 0.3295369349 - - PREDICTED: mitoferrin-like [Jatropha curcas]
17 Hb_000120_200 0.3307445828 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
18 Hb_000856_410 0.3313860899 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_005240_010 0.3319088407 transcription factor TF Family: NAC PREDICTED: NAC transcription factor NAM-B2 [Jatropha curcas]
20 Hb_002890_350 0.3324187545 - - UDP-glucuronosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_055314_010 Hb_055314_010 Hb_181402_010 Hb_181402_010 Hb_055314_010--Hb_181402_010 Hb_003127_050 Hb_003127_050 Hb_055314_010--Hb_003127_050 Hb_034013_010 Hb_034013_010 Hb_055314_010--Hb_034013_010 Hb_000002_090 Hb_000002_090 Hb_055314_010--Hb_000002_090 Hb_000039_120 Hb_000039_120 Hb_055314_010--Hb_000039_120 Hb_010055_020 Hb_010055_020 Hb_055314_010--Hb_010055_020 Hb_003717_020 Hb_003717_020 Hb_181402_010--Hb_003717_020 Hb_004981_010 Hb_004981_010 Hb_181402_010--Hb_004981_010 Hb_001758_030 Hb_001758_030 Hb_181402_010--Hb_001758_030 Hb_042463_050 Hb_042463_050 Hb_181402_010--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_181402_010--Hb_027204_010 Hb_004102_020 Hb_004102_020 Hb_003127_050--Hb_004102_020 Hb_002311_120 Hb_002311_120 Hb_003127_050--Hb_002311_120 Hb_000392_410 Hb_000392_410 Hb_003127_050--Hb_000392_410 Hb_003127_050--Hb_000039_120 Hb_134932_010 Hb_134932_010 Hb_003127_050--Hb_134932_010 Hb_002871_170 Hb_002871_170 Hb_034013_010--Hb_002871_170 Hb_004884_210 Hb_004884_210 Hb_034013_010--Hb_004884_210 Hb_034013_010--Hb_010055_020 Hb_034013_010--Hb_000002_090 Hb_001989_080 Hb_001989_080 Hb_034013_010--Hb_001989_080 Hb_000112_040 Hb_000112_040 Hb_034013_010--Hb_000112_040 Hb_000002_090--Hb_010055_020 Hb_107552_020 Hb_107552_020 Hb_000002_090--Hb_107552_020 Hb_000002_090--Hb_002871_170 Hb_000002_090--Hb_001989_080 Hb_030370_070 Hb_030370_070 Hb_000002_090--Hb_030370_070 Hb_171900_110 Hb_171900_110 Hb_000039_120--Hb_171900_110 Hb_000780_160 Hb_000780_160 Hb_000039_120--Hb_000780_160 Hb_000032_590 Hb_000032_590 Hb_000039_120--Hb_000032_590 Hb_000311_110 Hb_000311_110 Hb_000039_120--Hb_000311_110 Hb_001999_050 Hb_001999_050 Hb_000039_120--Hb_001999_050 Hb_004126_050 Hb_004126_050 Hb_000039_120--Hb_004126_050 Hb_000363_050 Hb_000363_050 Hb_010055_020--Hb_000363_050 Hb_010055_020--Hb_002871_170 Hb_005054_320 Hb_005054_320 Hb_010055_020--Hb_005054_320 Hb_010055_020--Hb_004884_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.323946 0.0500941 0.0611047 0 0.0717196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0764943 0 0 0 0.239042

CAGE analysis