Hb_002311_120

Information

Type -
Description -
Location Contig2311: 56754-57854
Sequence    

Annotation

kegg
ID rcu:RCOM_0999610
description hypothetical protein
nr
ID XP_002519182.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RZL3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0999610 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002311_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000399_030 0.2318591923 - - PREDICTED: uncharacterized protein LOC105634579 [Jatropha curcas]
3 Hb_003127_050 0.2679462576 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_130469_010 0.2753846652 - - pleiotropic drug resistance ABC transporter family protein, partial [Eleutherococcus senticosus]
5 Hb_001198_130 0.3091479503 - - PREDICTED: potassium channel AKT2/3 [Jatropha curcas]
6 Hb_005725_040 0.3120233104 - - -
7 Hb_019762_060 0.3141878496 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000926_210 0.3155770682 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
9 Hb_109515_010 0.3167911518 - - -
10 Hb_004102_020 0.318999012 - - -
11 Hb_001959_250 0.3216363208 - - hypothetical protein CARUB_v10015435mg [Capsella rubella]
12 Hb_000203_200 0.3261191668 - - Pollen allergen Che a 1 precursor, putative [Ricinus communis]
13 Hb_000318_300 0.3268641018 transcription factor TF Family: B3 PREDICTED: uncharacterized protein LOC105634339 [Jatropha curcas]
14 Hb_056196_010 0.3283918294 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
15 Hb_082655_010 0.3306176473 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
16 Hb_000483_330 0.3308489606 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
17 Hb_001115_020 0.3330521653 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 2-like [Populus euphratica]
18 Hb_002759_080 0.3351967952 - - PREDICTED: uncharacterized protein LOC105649846 [Jatropha curcas]
19 Hb_055314_010 0.3380795769 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
20 Hb_001396_120 0.3402118728 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 16 [Jatropha curcas]

Gene co-expression network

sample Hb_002311_120 Hb_002311_120 Hb_000399_030 Hb_000399_030 Hb_002311_120--Hb_000399_030 Hb_003127_050 Hb_003127_050 Hb_002311_120--Hb_003127_050 Hb_130469_010 Hb_130469_010 Hb_002311_120--Hb_130469_010 Hb_001198_130 Hb_001198_130 Hb_002311_120--Hb_001198_130 Hb_005725_040 Hb_005725_040 Hb_002311_120--Hb_005725_040 Hb_019762_060 Hb_019762_060 Hb_002311_120--Hb_019762_060 Hb_151103_010 Hb_151103_010 Hb_000399_030--Hb_151103_010 Hb_007076_010 Hb_007076_010 Hb_000399_030--Hb_007076_010 Hb_011794_050 Hb_011794_050 Hb_000399_030--Hb_011794_050 Hb_000320_040 Hb_000320_040 Hb_000399_030--Hb_000320_040 Hb_000926_210 Hb_000926_210 Hb_000399_030--Hb_000926_210 Hb_001366_390 Hb_001366_390 Hb_000399_030--Hb_001366_390 Hb_004102_020 Hb_004102_020 Hb_003127_050--Hb_004102_020 Hb_055314_010 Hb_055314_010 Hb_003127_050--Hb_055314_010 Hb_000392_410 Hb_000392_410 Hb_003127_050--Hb_000392_410 Hb_000039_120 Hb_000039_120 Hb_003127_050--Hb_000039_120 Hb_134932_010 Hb_134932_010 Hb_003127_050--Hb_134932_010 Hb_006501_130 Hb_006501_130 Hb_130469_010--Hb_006501_130 Hb_002759_080 Hb_002759_080 Hb_130469_010--Hb_002759_080 Hb_010638_010 Hb_010638_010 Hb_130469_010--Hb_010638_010 Hb_002499_050 Hb_002499_050 Hb_130469_010--Hb_002499_050 Hb_001379_120 Hb_001379_120 Hb_130469_010--Hb_001379_120 Hb_000638_220 Hb_000638_220 Hb_130469_010--Hb_000638_220 Hb_000987_100 Hb_000987_100 Hb_001198_130--Hb_000987_100 Hb_000027_140 Hb_000027_140 Hb_001198_130--Hb_000027_140 Hb_001168_070 Hb_001168_070 Hb_001198_130--Hb_001168_070 Hb_082655_010 Hb_082655_010 Hb_001198_130--Hb_082655_010 Hb_000923_100 Hb_000923_100 Hb_001198_130--Hb_000923_100 Hb_001396_120 Hb_001396_120 Hb_001198_130--Hb_001396_120 Hb_002107_090 Hb_002107_090 Hb_005725_040--Hb_002107_090 Hb_010315_080 Hb_010315_080 Hb_005725_040--Hb_010315_080 Hb_029622_030 Hb_029622_030 Hb_005725_040--Hb_029622_030 Hb_005194_040 Hb_005194_040 Hb_005725_040--Hb_005194_040 Hb_000152_760 Hb_000152_760 Hb_005725_040--Hb_000152_760 Hb_000212_300 Hb_000212_300 Hb_005725_040--Hb_000212_300 Hb_056196_010 Hb_056196_010 Hb_019762_060--Hb_056196_010 Hb_000203_200 Hb_000203_200 Hb_019762_060--Hb_000203_200 Hb_000086_320 Hb_000086_320 Hb_019762_060--Hb_000086_320 Hb_000018_140 Hb_000018_140 Hb_019762_060--Hb_000018_140 Hb_001959_250 Hb_001959_250 Hb_019762_060--Hb_001959_250 Hb_000679_030 Hb_000679_030 Hb_019762_060--Hb_000679_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113255 0.156978 0.0740505 0 0.0258936
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.134749 0 0 0 0.106357

CAGE analysis